PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142587.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 535aa    MW: 59122.9 Da    PI: 7.5645
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142587.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.1e-31199256260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers  d+++++i+Y+g+H+h+k
  XP_009142587.1 199 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSY-DGQITDIIYKGTHDHPK 256
                     8****************************************.***************85 PP
2WRKY107.28e-34356414159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_009142587.1 356 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 414
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.365193257IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-26196257IPR003657WRKY domain
SuperFamilySSF1182909.02E-25196257IPR003657WRKY domain
SMARTSM007742.2E-32198256IPR003657WRKY domain
PfamPF031061.0E-23199255IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-37341416IPR003657WRKY domain
SuperFamilySSF1182901.57E-29348416IPR003657WRKY domain
PROSITE profilePS5081138.629351416IPR003657WRKY domain
SMARTSM007743.1E-39356415IPR003657WRKY domain
PfamPF031064.2E-26357414IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MNPQVNNDRK EFPVDPTARH DSSRGVGGNG GGGARYKLMS PAKLPISRST DIMIPPGLSP  60
TSFLESPVFI SNIKPEPSPT TGSLFKPRPV HVSSSSYTGR PFHQDSTEQK SSEFEFRPPA  120
STMVYAELDN HKREPAVQFQ GQGYGSSHSP SSISEAAANS SELRRPTQSS DIPAGSELDE  180
SVQASQNDPR GSAPSVLADD GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE VKKLFERSYD  240
GQITDIIYKG THDHPKPQPG RRNSCGLGMS AQEERVEKSV YNLSQAIEQV GNPEVPPTTE  300
DGGEVAVSNK SKDDQDEDDP YTKRRRLDGT MEITPLVKPI REPRVVVQTL SEVDILDDGY  360
RWRKYGQKVV RGNPNPRSYY KCTAPGCPVR KHVERASHDP KAVITTYEGK HNHDVPTSKS  420
SSNHHDNQPR FRPGETDTVS LNLGVGISSD GPDHTSNERQ HQNQQQLINQ THPNGVGFRF  480
VHAAPVASYY ASLNGGLNQY APRETQNETQ NGDISSLNHS SYPYPHNIGR IQSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-38197416877Probable WRKY transcription factor 4
2lex_A9e-38197416877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322326KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142587.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931330.0KM593133.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142587.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLM4ECA50.0M4ECA5_BRARP; Uncharacterized protein
STRINGBra026414.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein