PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142499.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 455aa    MW: 48587.9 Da    PI: 8.7665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142499.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.49e-125477427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    + C +++rtG C yG+rC+F+H+p
  XP_009142499.1 54 PDCAYYMRTGVCGYGSRCRFNHPP 77
                    78********************97 PP
2zf-CCCH38.71.7e-12100122527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+f+++tGtCk+G++CkF+H++
  XP_009142499.1 100 PCQFYLKTGTCKFGASCKFNHPR 122
                     7********************96 PP
3zf-CCCH33.57.3e-11145169226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++ +C++f++tG+Ck+G +CkF+H+
  XP_009142499.1 145 GENECSYFLKTGQCKFGITCKFHHP 169
                     5679********************8 PP
4zf-CCCH37.83.1e-12288314127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tG Ck+G +CkF+H++
  XP_009142499.1 288 PGEPECQYYLKTGDCKFGTSCKFHHPR 314
                     5799*********************96 PP
5zf-CCCH33.57e-11335359226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +  +C+f+ ++G+Ck+G++CkF H+
  XP_009142499.1 335 GVQRCSFYVQNGFCKFGSTCKFDHP 359
                     6779********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.6E-55077IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7795078IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-65478IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-95477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-55676IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-595122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-698123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5100122IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10100122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.943100123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864143171IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-5143170IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8145169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5146171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356287315IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5287314IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9289314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6292317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5293315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098333361IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-6333360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6335364IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8335359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-5339359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDMYGRTPPT AMNGSHAPPQ WTPGDADTGL LLQESSMWRL GLGSETYPQR AGAPDCAYYM  60
RTGVCGYGSR CRFNHPPDRA SVEATVRATG QYPERIGALP CQFYLKTGTC KFGASCKFNH  120
PRNAAAGGSM THVPLNIYGY PVRQGENECS YFLKTGQCKF GITCKFHHPH PASASASASA  180
AATLPPPASA PQFYSSVQHH SLMPGPPSSS LRPLLPGSYM QGAYGPMLLT TPGVLPIQAW  240
NPYSAPVSPA LSPGAASLYG VTQLSSTTPG VYPSGVVTLK EESFPERPGE PECQYYLKTG  300
DCKFGTSCKF HHPRDRVPPR PNCDLSSIGL PLRPGVQRCS FYVQNGFCKF GSTCKFDHPV  360
GTIRYNPSAS SLADAPVAPY PVTSLLASSS SSSAELIPGD PYLGASSRST SNNISAGLIF  420
SQSGVSLPPF TDLQTSLSLS GSRITRQGRE IRRSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142499.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896340.0AC189634.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142499.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A3P5ZAS40.0A0A3P5ZAS4_BRACM; Uncharacterized protein
STRINGBra004427.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein