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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009142454.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 255aa MW: 29463.5 Da PI: 9.341 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 5.1e-12 | 103 | 153 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N ++ Lr+l+P++ + + + a+i+ A++++k L XP_009142454.1 103 KRMTHIAVERNRRRQMNVHLNSLRSLIPSS---YFLRGDQASIVGGAIDFVKIL 153 79***************************9...9999***********999866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-15 | 96 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.39E-11 | 100 | 158 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-12 | 101 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.145 | 102 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-9 | 103 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-7 | 108 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MLQDPSSVLS FKDPHILGNY LPYEVPEFHS PFHSDNNHYY QNPFLEGTNE DISSQELQLN 60 PVDNAFSRRK LRNNNLAASV SREKRKRRRS KPMKNREEME SQKRMTHIAV ERNRRRQMNV 120 HLNSLRSLIP SSYFLRGDQA SIVGGAIDFV KILEQHLQSL EAQKITQQTS KLIIDATVTE 180 RHVSLKIQYC QRKQGQLLRS IFLLEKLGLT VLHLNVTSPC NASVSYSFNL KMEEDCNLGS 240 VDEITAAVRQ IFDYC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 88 | RRKLRNNNLAASVSREKRKRRR |
2 | 83 | 88 | KRKRRR |
3 | 84 | 88 | RKRRR |
4 | 84 | 89 | RKRRRS |
5 | 84 | 91 | RKRRRSKP |
6 | 103 | 114 | RMTHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009142454.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018514072.1 | 0.0 | PREDICTED: transcription factor bHLH70-like isoform X1 | ||||
Refseq | XP_018514073.1 | 0.0 | PREDICTED: transcription factor bHLH70-like isoform X2 | ||||
Swissprot | O81037 | 1e-117 | BH070_ARATH; Transcription factor bHLH70 | ||||
TrEMBL | A0A078IFU7 | 0.0 | A0A078IFU7_BRANA; BnaA04g26770D protein | ||||
TrEMBL | A0A3P6CP91 | 0.0 | A0A3P6CP91_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FHA5 | 0.0 | M4FHA5_BRARP; Uncharacterized protein | ||||
STRING | Bra040483.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 1e-118 | bHLH family protein |
Publications ? help Back to Top | |||
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