PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142452.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 312aa    MW: 36073.9 Da    PI: 8.9128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87e-12160210154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r++h ++Er+RR+++N  ++ Lr+l+P++   +  + + a+i+  A++++k L
  XP_009142452.1 160 KRMTHIAVERNRRRQMNVHLNSLRSLIPSS---YFLRGDQASIVGGAIDFVKIL 210
                     79***************************9...99999**********999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-15153220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-10157215No hitNo description
Gene3DG3DSA:4.10.280.103.0E-12158215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.145159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-9160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-7165216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MERIQGQNKL CVNLLDQKVN VRRSLQVQAS PEDHSFPLEE DQYSTLTLQG TRLPFQQMLQ  60
DPSSVLSFKD PHILGNYLPY EVPEFHSPFH SDNNHYYQNP FLEGTNEDIS SQELQLNPVD  120
NAFSRRKLRN NNLAASVSRE KRKRRRSKPM KNREEMESQK RMTHIAVERN RRRQMNVHLN  180
SLRSLIPSSY FLRGDQASIV GGAIDFVKIL EQHLQSLEAQ KITQQTSKLI IDATVTERHV  240
SLKIQYCQRK QGQLLRSIFL LEKLGLTVLH LNVTSPCNAS VSYSFNLKME EDCNLGSVDE  300
ITAAVRQIFD YC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124145RRKLRNNNLAASVSREKRKRRR
2140145KRKRRR
3141145RKRRR
4141146RKRRRS
5141148RKRRRSKP
6160171RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142452.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018514072.10.0PREDICTED: transcription factor bHLH70-like isoform X1
SwissprotO810371e-133BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A078IFU70.0A0A078IFU7_BRANA; BnaA04g26770D protein
TrEMBLA0A3P6CP910.0A0A3P6CP91_BRACM; Uncharacterized protein
TrEMBLM4FHA50.0M4FHA5_BRARP; Uncharacterized protein
STRINGBra040483.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-135bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]