PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009142436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 237aa MW: 27966.1 Da PI: 5.1331 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.2 | 2.4e-17 | 21 | 75 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++f++eq++ Le +Fe++ + +++ +LA++l+L+ r V +WFqN+Ra++k XP_009142436.1 21 KNQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELSLQPRPVAIWFQNKRARWK 75 66789*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.4 | 3.3e-37 | 22 | 113 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++rr+s+eq+k+LE++Fe+e++Lep++Kv+lareL lqpr va+WFqn+RAR+k+kqlE++++ L+++y+ l+++ e+L+ke++ L +el++ XP_009142436.1 22 NQRRFSDEQIKSLEMMFESETRLEPRKKVQLARELSLQPRPVAIWFQNKRARWKSKQLETEFNILRQNYNDLASQFESLKKENQGLVSELDR 113 68************************************************************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-16 | 13 | 76 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.52E-16 | 15 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.73 | 17 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-12 | 20 | 81 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-14 | 21 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.38E-12 | 21 | 78 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 52 | 75 | IPR017970 | Homeobox, conserved site |
Gene3D | G3DSA:1.20.5.50 | 3.6E-4 | 77 | 146 | No hit | No description |
Pfam | PF02183 | 3.5E-14 | 77 | 117 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MMSADPFMTM KKIKKSSHNE KNQRRFSDEQ IKSLEMMFES ETRLEPRKKV QLARELSLQP 60 RPVAIWFQNK RARWKSKQLE TEFNILRQNY NDLASQFESL KKENQGLVSE LDRLNEAIQT 120 KQDEGRECCG DQTVVALSST DHESEKEENT KPEPEEVRPE MEVYEKGHHD DYGYNSHIKR 180 EYFGGFEEEA DHLMNIVEPA DSCLTSSVDW RGFKTNTNIL DQSSSNYPWW HFWSSTI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.19820 | 1e-115 | bud| flower| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009142436.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352871 | 0.0 | AK352871.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-L20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142436.1 | 1e-179 | PREDICTED: homeobox-leucine zipper protein ATHB-7 | ||||
Swissprot | P46897 | 1e-131 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A397ZQD8 | 1e-176 | A0A397ZQD8_BRACM; Uncharacterized protein | ||||
STRING | Bo4g197260.1 | 1e-169 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2498 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-119 | homeobox 7 |
Publications ? help Back to Top | |||
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