PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GATA

Protein Properties

Length: 256aa MW: 28181.2 Da PI: 8.2863

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009142314.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.2	2.2e-18	172	206	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l XP_009142314.1 172 CTHCASDKTPQWRTGPLGPKTLCNACGVRFKSGRL 206 *******************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	1.1E-87	2	255	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	5.4E-15	166	216	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.187	170	202	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.8E-13	170	204	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	2.33E-14	170	230	No hit	No description
CDD	cd00202	3.23E-14	171	218	No hit	No description
Pfam	PF00320	2.9E-16	172	206	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	172	197	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MDVYGLSSQD LLRVDDLLDF SNEDIFSASS STSTAATSSS SFPPQNPNYH HHHLPSSADH 60 SFLHDICVPS DDAAHLEWLS QFVDDSFADF PANPLGGTMT SVKTETSFTG KPRSKRSKPP 120 STLVGTWAPM SETDQNIHVA GRSKPKKEHS GGGGRHQSSS AETAEGAGLR RCTHCASDKT 180 PQWRTGPLGP KTLCNACGVR FKSGRLVPEY RPASSPTFVL TQHSNSHRKV MELRRQKEVM 240 RQPHQVQLHH HHHPSF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.31993	0.0	bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269\|PubMed:12139008}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009142314.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009142314.1	0.0	PREDICTED: GATA transcription factor 2-like
Swissprot	O49741	1e-130	GATA2_ARATH; GATA transcription factor 2
TrEMBL	A0A078HJL6	0.0	A0A078HJL6_BRANA; GATA transcription factor
TrEMBL	A0A3P6D6K4	0.0	A0A3P6D6K4_BRACM; GATA transcription factor
TrEMBL	M4FGV1	0.0	M4FGV1_BRARP; GATA transcription factor
STRING	Bra040329.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3203	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45050.1	1e-126	GATA transcription factor 2

Publications ? help Back to Top
Jiang K,Yung V,Chiba T,Feldman LJ Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain. Planta, 2018. 247(4): p. 831-843 [PMID:29249045]