PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009142273.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 534aa    MW: 58828.2 Da    PI: 6.617
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009142273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31158215260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y  +Hnh+k
  XP_009142273.1 158 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEVKKKVERSR-EGHITEIIYAKTHNHPK 215
                     8****************************************.***************85 PP
2WRKY99.52e-31341398259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+vkg+++prsYY+Ct +gC v+k+ver+++d + v +tY g+H+he
  XP_009142273.1 341 EDGYRWRKYGQKVVKGNPNPRSYYKCTATGCIVTKHVERASDDLTSVLTTYIGKHTHE 398
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27155216IPR003657WRKY domain
SuperFamilySSF1182902.62E-25156216IPR003657WRKY domain
SMARTSM007744.0E-33157215IPR003657WRKY domain
PROSITE profilePS5081123.032158216IPR003657WRKY domain
PfamPF031064.0E-24158214IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-33325400IPR003657WRKY domain
SuperFamilySSF1182909.15E-28332400IPR003657WRKY domain
PROSITE profilePS5081134.13335400IPR003657WRKY domain
SMARTSM007741.3E-35340399IPR003657WRKY domain
PfamPF031066.4E-24341398IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MTGFSDTFAV MGEWVDCSTN HKKRSKAELD RETSLEEDVK NKDFLQTNFQ ERSSYSGGGL  60
SERVAARAGF KVPSINTESN LWSLNISSPG ATPATLLESP VFLSNPLLSP TTGKLSSLPS  120
DHKAKDEFFD PTIIGVESDA SQVYEQTHNI GLGGAPADDG YNWRKYGQKL VKGSEYPRSY  180
YKCTHPNCEV KKKVERSREG HITEIIYAKT HNHPKPPLNR RSGIGSSGTC NDMQIDGTEQ  240
QGLAGTNENI EWTSPVRNYG SMQVQNRTQF GYGDAAFFKD EDEEDRTSHM SDSMGYYGEA  300
DESEPKRRKL EAYATEMSGS TRANRAPKVV VKTTSDIDIL EDGYRWRKYG QKVVKGNPNP  360
RSYYKCTATG CIVTKHVERA SDDLTSVLTT YIGKHTHEVP AARSSSSHMS SGSSGTIQGG  420
LPTQTHNNHV HYPVPHSRSE GLVTANSSLF DFQTPMRPPW AGFSVYGGET ELLGLSISGL  480
AIGQERFSMP ATGDPAGLML QLPAEPKLEQ VSQQELGFSR NSLIYRDTSS LPQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-30158401878Probable WRKY transcription factor 4
2lex_A5e-30158401878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009142273.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142273.10.0PREDICTED: probable WRKY transcription factor 34
SwissprotO655900.0WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLM4ECC90.0M4ECC9_BRARP; Uncharacterized protein
STRINGBra026438.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.10.0WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]