![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009141879.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 417aa MW: 47011.5 Da PI: 6.4685 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.7 | 9.5e-32 | 93 | 146 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+ XP_009141879.1 93 PRLRWTPELHLCFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 146 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-30 | 89 | 147 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.025 | 89 | 149 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.73E-16 | 90 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-24 | 93 | 148 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-9 | 94 | 145 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 417 aa Download sequence Send to blast |
MTPSSQSSEN SKTCPSNNFK ATTTKEDNDK DEEEEEEEEE EEEEEDEEER SADQSPSSNS 60 YVEESGSQHH HNNNDQIKKN GGSVRPYNRS KTPRLRWTPE LHLCFLQAVE RLGGPDRATP 120 KLVLQLMNVK GLSIAHVKSH LQMYRSKKID DLNQGDQGFS FEHGAGYTYN LSQPPMLQSF 180 DQGPSTSLGY GGGSWIDHRR QVYRSPWRGL TARDNTRTRQ TLFSSQLGER FHGVSNSILD 240 DKNKTISFRT NSREAAHASN GIGEAVPRSH RSFLEGMKTF NKSWGQSFPS NPNPSMPSKP 300 QDHTAVTLNF HQSDNPRVGE ETENDLKRKR LLLSGDYNKS NPDLDLSLSL KVPPTHNNLG 360 ECLLEEGEKE HEDSKRLSLS LSSSSLSQHG RAIRKEDQND HKKRKISVLA SPLDLTL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-17 | 94 | 148 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-17 | 94 | 148 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-17 | 94 | 148 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-17 | 94 | 148 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009141879.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC232572 | 0.0 | AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009141879.1 | 0.0 | PREDICTED: two-component response regulator ARR1-like isoform X2 | ||||
TrEMBL | A0A397ZP06 | 0.0 | A0A397ZP06_BRACM; Uncharacterized protein | ||||
STRING | Bo4g188940.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40260.1 | 0.0 | G2-like family protein |