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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009141554.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
E2F/DP |
Protein Properties |
Length: 489aa MW: 53151.1 Da PI: 4.6765 |
Description |
E2F/DP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009141554.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | E2F_TDP | 82.4 | 3.7e-26 | 168 | 233 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
r+++sL+llt+kf++l++++++g+++ln++a++L +v ++RRiYDi+NVLe+++liek kn+i wkg
XP_009141554.1 168 RYDSSLGLLTRKFVNLIKQAKDGMLDLNKAAETL---EV--QKRRIYDITNVLEGIDLIEKPFKNQILWKG 233
6899******************************...99..****************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005667 | Cellular Component | transcription factor complex |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 489 aa
Download sequence Send
to blast |
MSGGARSSPG PSQPPPPHHP PSSPSPSSSL PVVPPIRRNL AFASTKPPFS PSDYHRFAPS 60 HLTDNDKSLV NVCELVDRED DDVVVHRSPS RKRKTTTDVV AAPSNSNGLT SSGFSTISNS 120 PCKTPVSAKG GRVNTKSKAK GNQSVPQTPI SNAVVGSPAT LTPSGSCRYD SSLGLLTRKF 180 VNLIKQAKDG MLDLNKAAET LEVQKRRIYD ITNVLEGIDL IEKPFKNQIL WKGLDTSGPG 240 DVDADVSVLQ AEIENFSLEE QALDNQIRET EERLRELSEN EKNQKWLFVT EEDIKSLPGF 300 QNQTLIAVKA PHGTTLEVPD PDEAVDIPQR RYRIILRSTM GPIDVYLVSE FEKKFEDTNG 360 TATPPPPACL PIASCSGSSE NHEIEALIVD NKGTANEHQA SQDHAHAQPG DTSDLNHLQE 420 QVGGMLKITP SDVENDDTDY WLLSNADISM TDIWKTDSGI DWDYEIADVS TPPPVMGEIA 480 PTGIDSTPR
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in early S phase. Decreased expression during the passage into G2. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543}. |
Uniprot | TISSUE SPECIFICITY: Highly expressed in the shoot apical meristem, emerging leaf primordia, and vascular tissues of young leaf primordia. Expressed in flowers, in epidermis and cortex of hypocotyls, and at lower levels in leaves. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11889041}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JN942984 | 0.0 | JN942984.1 Brassica juncea E2F transcription factor (E2Fa) mRNA, partial cds. |