PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TALE

Protein Properties

Length: 675aa MW: 73460.3 Da PI: 6.8284

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009141537.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.5e-09	394	431	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_009141537.1 394 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 431 554459******************************88 PP
2	BELL	123.5	8.8e-40	253	324	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL s+l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi XP_009141537.1 253 ERQEIQMKKAKLSSMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQI 324 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.3E-77	173	322	IPR006563	POX domain
Pfam	PF07526	4.1E-47	179	321	IPR006563	POX domain
PROSITE profile	PS50071	12.26	372	435	IPR001356	Homeobox domain
CDD	cd00086	1.81E-12	375	436	No hit	No description
SMART	SM00389	2.3E-9	375	439	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-17	376	442	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-29	378	441	IPR009057	Homeodomain-like
Pfam	PF05920	2.8E-18	392	431	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MAAYFHGNPS EISAGPDGGL QTLILMNPTT YVQYTQQDDD SNNNNNSNNN ANNNNSFVFL 60 DSHAPPQNAS QQFVGIPLSG HEAASITAAD NISVLHGYPP RVQYSLYNSH QVDPTHQQAA 120 CETPRAQRGL SLSLSSQQQQ QQQQHQTLHH VGFGSGPGED IRVGPGSTGS GVTNGIANLV 180 SSKYLKAAQE LLDEVVNADS NDINIKSQLF SSKKGTSGTD NKAVGESSTG AGEGSGGGGE 240 ASGKRTVELG TAERQEIQMK KAKLSSMLHE VEQRYRQYHQ QMQMVISSFE QAAGIGSAKS 300 YTSLALKTIS RQFRCLKEAI AGQIKAANKS LGEEDSVSGV GTLEGSRLKF VDHHLRQQRA 360 LQQLGMIQHP SNNAWRPQRG LPERAVSVLR AWLFEHFLHP YPKDSDKHML AKQTGLTRSQ 420 VSNWFINARV RLWKPMVEEM YTEEMKEQGK NMGSMEKTPN MDQNNEDSAS KSTSNQEKSP 480 MGGGGADNYH MNPNHNGDLE GVTGMQGSPK RLRTSEETMM QPINADFSSN EKLTMKILEE 540 RQGLRSDGGY PFMGNFGQYQ MDEMSRFEVA VSDQELLAQR YSGNNNGVSL TLGLPHCDSL 600 SSTHHQGFMQ THHGIPIGRR VKIGEADDYG AAALNGGGGS AATVHSSATA AAAYNGMNIQ 660 NQKRYVAQLL PDFVA

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MAAYFHGNPS EISAGPDGGL QTLILMNPTT YVQYTQQDDD SNNNNNSNNN ANNNNSFVFL  60
DSHAPPQNAS QQFVGIPLSG HEAASITAAD NISVLHGYPP RVQYSLYNSH QVDPTHQQAA  120
CETPRAQRGL SLSLSSQQQQ QQQQHQTLHH VGFGSGPGED IRVGPGSTGS GVTNGIANLV  180
SSKYLKAAQE LLDEVVNADS NDINIKSQLF SSKKGTSGTD NKAVGESSTG AGEGSGGGGE  240
ASGKRTVELG TAERQEIQMK KAKLSSMLHE VEQRYRQYHQ QMQMVISSFE QAAGIGSAKS  300
YTSLALKTIS RQFRCLKEAI AGQIKAANKS LGEEDSVSGV GTLEGSRLKF VDHHLRQQRA  360
LQQLGMIQHP SNNAWRPQRG LPERAVSVLR AWLFEHFLHP YPKDSDKHML AKQTGLTRSQ  420
VSNWFINARV RLWKPMVEEM YTEEMKEQGK NMGSMEKTPN MDQNNEDSAS KSTSNQEKSP  480
MGGGGADNYH MNPNHNGDLE GVTGMQGSPK RLRTSEETMM QPINADFSSN EKLTMKILEE  540
RQGLRSDGGY PFMGNFGQYQ MDEMSRFEVA VSDQELLAQR YSGNNNGVSL TLGLPHCDSL  600
SSTHHQGFMQ THHGIPIGRR VKIGEADDYG AAALNGGGGS AATVHSSATA AAAYNGMNIQ  660
NQKRYVAQLL PDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	9e-17	381	438	1	58	Homeobox protein Meis1
4xrs_B	9e-17	381	438	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.3742	0.0	leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009141537.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141536.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_009141537.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	M4DL96	0.0	M4DL96_BRARP; Uncharacterized protein
STRING	Bra017277.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	0.0	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]