PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009141496.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 185aa MW: 20229 Da PI: 4.6697 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.4 | 7.3e-14 | 97 | 140 | 20 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 20 sRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +R+RK+ae++eL++++++L +eN +L++e+++l+ ++++l+se+ XP_009141496.1 97 YRLRKQAECDELAQRAEVLNEENASLREEINKLRSQCEELTSEN 140 7*****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.0E-4 | 89 | 142 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.4E-11 | 97 | 140 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.6E-8 | 97 | 136 | No hit | No description |
CDD | cd14702 | 8.08E-10 | 98 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006302 | Biological Process | double-strand break repair | ||||
GO:0006310 | Biological Process | DNA recombination | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MELTLKVGRV LLMVQVKEVM QTLKIPLYNS GSGGSANGPR DGSVGCQTVP VMPMTAAGVP 60 APPTNLNIGV LLLQHLHQFM ESLLQCHEMV AVHSLGYRLR KQAECDELAQ RAEVLNEENA 120 SLREEINKLR SQCEELTSEN NSLKDQLLSF PTLEGVAMDK DEQEPPDTNQ TGVAETKADS 180 SKDSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009141496.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410711.1 | 3e-55 | bZIP transcription factor 16 isoform X1 | ||||
Refseq | XP_024004269.1 | 3e-55 | bZIP transcription factor 16 isoform X1 | ||||
Refseq | XP_024004270.1 | 3e-55 | bZIP transcription factor 16 isoform X2 | ||||
Swissprot | Q501B2 | 5e-54 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | A0A078HPI7 | 3e-79 | A0A078HPI7_BRANA; BnaA04g20520D protein | ||||
STRING | Bra017316.1-P | 7e-77 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 2e-56 | basic region/leucine zipper transcription factor 16 |
Publications ? help Back to Top | |||
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