PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009141495.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 187aa MW: 20472.3 Da PI: 4.7835 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.7 | 2.9e-14 | 98 | 142 | 19 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 19 rsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 rsR+RK+ae++eL++++++L +eN +L++e+++l+ ++++l+se+ XP_009141495.1 98 RSRLRKQAECDELAQRAEVLNEENASLREEINKLRSQCEELTSEN 142 9******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.3E-6 | 92 | 144 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.53E-11 | 98 | 135 | No hit | No description |
PROSITE profile | PS50217 | 8.841 | 98 | 145 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.4E-12 | 98 | 142 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.69E-5 | 98 | 138 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.7E-9 | 98 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006302 | Biological Process | double-strand break repair | ||||
GO:0006310 | Biological Process | DNA recombination | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MELTLKVGRV LLMVQVKEVM QTLKIPLYNS GSGGSANGPR DGSVGCQTVP VMPMTAAGVP 60 APPTNLNIGV LLLQHLHQFM ESLLQCHEMV AVHSLGYRSR LRKQAECDEL AQRAEVLNEE 120 NASLREEINK LRSQCEELTS ENNSLKDQLL SFPTLEGVAM DKDEQEPPDT NQTGVAETKA 180 DSSKDSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009141495.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024004270.1 | 5e-57 | bZIP transcription factor 16 isoform X2 | ||||
Swissprot | Q501B2 | 8e-56 | BZP16_ARATH; bZIP transcription factor 16 | ||||
TrEMBL | A0A3P6CK53 | 4e-81 | A0A3P6CK53_BRACM; Uncharacterized protein | ||||
STRING | Bra017316.1-P | 1e-76 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35530.1 | 3e-58 | basic region/leucine zipper transcription factor 16 |
Publications ? help Back to Top | |||
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