PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009141404.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 424aa MW: 46155 Da PI: 5.1219

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009141404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.9	3.2e-31	219	277	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ XP_009141404.1 219 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 277 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-31	212	279	IPR003657	WRKY domain
PROSITE profile	PS50811	33.247	213	279	IPR003657	WRKY domain
SuperFamily	SSF118290	1.15E-26	217	279	IPR003657	WRKY domain
SMART	SM00774	1.5E-38	218	278	IPR003657	WRKY domain
Pfam	PF03106	3.7E-26	220	277	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MCSVFESLDM DNFQGDLTDV VRGLGSGHMT SSPGPPEGPF AISLSTPPTS DFHVDFPSVA 60 NSQMNPFGDP FVSMTDPLLS LPANFSGAGD SKSNNSFAVF PNTTVDDHVK NQCSVFPRIR 120 ISQRNIIQDA SKCNSPAMAT SSVTAASPWG MMNVDSPNSP RNCLLVDNNN ITSSSSQIQI 180 SSCPQNFGIT RRKGQGKKVV CIPAPAAASS RSSGEIVPSD LWAWRKYGQK PIKGSPYPRG 240 YYRCSSSKGC PARKQVERSR TDPNMLVITY TSEHNHPWPT QRNALAGSTR SSSSSSSNPC 300 SKSTIATTSA LSRVSQNKEE PNRSHLPFSS TPPPYVAKAV KEEDAEERKD NMEFDDVDDT 360 YRPEFQHQLG DFFADLDELE EDSLTMLLPQ GFSGDNSGGG NLDNKRMIPD VFSDFFDDDS 420 PRSL

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MCSVFESLDM DNFQGDLTDV VRGLGSGHMT SSPGPPEGPF AISLSTPPTS DFHVDFPSVA  60
NSQMNPFGDP FVSMTDPLLS LPANFSGAGD SKSNNSFAVF PNTTVDDHVK NQCSVFPRIR  120
ISQRNIIQDA SKCNSPAMAT SSVTAASPWG MMNVDSPNSP RNCLLVDNNN ITSSSSQIQI  180
SSCPQNFGIT RRKGQGKKVV CIPAPAAASS RSSGEIVPSD LWAWRKYGQK PIKGSPYPRG  240
YYRCSSSKGC PARKQVERSR TDPNMLVITY TSEHNHPWPT QRNALAGSTR SSSSSSSNPC  300
SKSTIATTSA LSRVSQNKEE PNRSHLPFSS TPPPYVAKAV KEEDAEERKD NMEFDDVDDT  360
YRPEFQHQLG DFFADLDELE EDSLTMLLPQ GFSGDNSGGG NLDNKRMIPD VFSDFFDDDS  420
PRSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	6e-25	197	280	6	80	Disease resistance protein RRS1
5w3x_D	6e-25	197	280	6	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009141404.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593147	0.0	KM593147.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY53) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141404.1	0.0	PREDICTED: probable WRKY transcription factor 35
Swissprot	O64747	0.0	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	M4DZI7	0.0	M4DZI7_BRARP; Uncharacterized protein
STRING	Bra021934.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3085	28	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-152	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]