PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009141146.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 675aa MW: 73812.2 Da PI: 6.2039

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009141146.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00036	512	560	13	40
HHHHHHHHHHHHCTSCCC........................TTS-STC CS HLH 13 RdriNsafeeLrellPkas.....................kapskKlsK 40 R+ i +++ eLrel+P+ s ++ KlsK XP_009141146.1 512 RQLIQDRIKELRELVPNGSkcsidsllertikhmlflqnvTKHADKLSK 560 67799************53355555555555555555555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.4E-30	6	163	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	9.24E-4	494	550	No hit	No description
PROSITE profile	PS50888	11.28	499	548	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-4	512	561	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-5	512	554	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 675 aa Download sequence Send to blast
MGSTSQEILR SLCSNTEWRY AVFWKLNHRS RMVLTLEDAY YDNHGHNNNS PEVQGCSVVP 60 KDMHGAHDSL GLAVAKMAYH VYSLGEGIVG QVAVSGGYQW VFPEYNGNCH SASEFHNVWE 120 SQISGGVKTI LVVAVGPCGV VQLGSLHKVD EDVTLVNHIR HMFLALKDPL ADHAASLMQC 180 NLNNSLSLPK IPSECLHVEA LPNCSGEVGK AMNVASVPYN TPSCLLMEKA AQAVQGSSCG 240 SYSSVTFGFP IDLVDAKHES QVGTNIVSYA PHVLNNSSSS ALATEAERLI SSQSYPGLDS 300 TFYDSSRTGK ESSYQNEVFQ LSENQGNRYI EETERMLEGK CKDALISSGY PFAGSELLEA 360 LGSGFKQTSR GGHEELVKSE HGSTTSPTDD MSHSQLTFDP GPENLLDAVV ANVCHSDGNA 420 RDDILSSRSV QSLLTSMAEP SGQKMHNQLP LAEVYTQQNP SDICGAFSSI GFSSTCPSSS 480 SDQFQTSLEM MPKKIKKRAK PGESSRPRPR DRQLIQDRIK ELRELVPNGS KCSIDSLLER 540 TIKHMLFLQN VTKHADKLSK SATTKMQQKE TGTQGSSCAV EVGGHLQVCS IIVENLNKQG 600 MVLIEMLCEE CGHFLEIANV IRSLDLIILR GVTEAQGEKT WICFVVESQN NKVMQRMDIL 660 WSLVQIFQPK ANGKH

Sequence ? help Back to Top

Protein Sequence Length: 675 aa Download sequence Send to blast

MGSTSQEILR SLCSNTEWRY AVFWKLNHRS RMVLTLEDAY YDNHGHNNNS PEVQGCSVVP  60
KDMHGAHDSL GLAVAKMAYH VYSLGEGIVG QVAVSGGYQW VFPEYNGNCH SASEFHNVWE  120
SQISGGVKTI LVVAVGPCGV VQLGSLHKVD EDVTLVNHIR HMFLALKDPL ADHAASLMQC  180
NLNNSLSLPK IPSECLHVEA LPNCSGEVGK AMNVASVPYN TPSCLLMEKA AQAVQGSSCG  240
SYSSVTFGFP IDLVDAKHES QVGTNIVSYA PHVLNNSSSS ALATEAERLI SSQSYPGLDS  300
TFYDSSRTGK ESSYQNEVFQ LSENQGNRYI EETERMLEGK CKDALISSGY PFAGSELLEA  360
LGSGFKQTSR GGHEELVKSE HGSTTSPTDD MSHSQLTFDP GPENLLDAVV ANVCHSDGNA  420
RDDILSSRSV QSLLTSMAEP SGQKMHNQLP LAEVYTQQNP SDICGAFSSI GFSSTCPSSS  480
SDQFQTSLEM MPKKIKKRAK PGESSRPRPR DRQLIQDRIK ELRELVPNGS KCSIDSLLER  540
TIKHMLFLQN VTKHADKLSK SATTKMQQKE TGTQGSSCAV EVGGHLQVCS IIVENLNKQG  600
MVLIEMLCEE CGHFLEIANV IRSLDLIILR GVTEAQGEKT WICFVVESQN NKVMQRMDIL  660
WSLVQIFQPK ANGKH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009141146.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141146.1	0.0	PREDICTED: transcription factor bHLH155-like
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	M4DYW8	0.0	M4DYW8_BRARP; Uncharacterized protein
STRING	Bra021715.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]