PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141082.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 321aa    MW: 36118.1 Da    PI: 10.4904
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30255313360
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eH h+k
  XP_009141082.1 255 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCVEDPAMLIVTYEAEHSHPK 313
                     99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.7E-16210251IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.0E-33241313IPR003657WRKY domain
PROSITE profilePS5081129.93248314IPR003657WRKY domain
SuperFamilySSF1182902.75E-26251313IPR003657WRKY domain
SMARTSM007742.6E-36253313IPR003657WRKY domain
PfamPF031065.2E-26255312IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEEIEGTNRA AVESCHRVLN LLHQLDHGRS LVSETREAVS RFKRVGSLLS KSVGHARFRR  60
ANKKPLTHLS QTIFLDPCLL QTTQLPESSQ KLRSGFHELS LRPNDSLTLG TRSFSLKAPP  120
LLQLNQQQQQ QQLQAHHLHQ QQQRHHQAEI MLRKCSGGIS LSFDNSSCTP TMSSTRSFVS  180
SLSIDGSVAN AEGRNSFHVV GDQSLLPHSK RKCLLKGDEH GSSSRCHCSK KRKHRVRRSI  240
RVPAISNKVA DIPPDDYSWR KYGQKPIKGS PYPRGYYKCS SMRGCPARKH VERCVEDPAM  300
LIVTYEAEHS HPKLPSQAVT T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20241316276WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.59780.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141082.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123941e-153EU912394.1 Brassica napus WRKY21-1 transcription factor (WRKY21-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141082.10.0PREDICTED: probable WRKY transcription factor 21
SwissprotO043361e-164WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLM4DYQ60.0M4DYQ6_BRARP; Uncharacterized protein
STRINGBra021652.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-92WRKY DNA-binding protein 21