PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141016.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 372aa    MW: 40747.4 Da    PI: 8.2583
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141016.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00026121144123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ Cg+ F+   +L++H  + H
  XP_009141016.1 121 FSCTTCGEIFPKTNLLEHHFAVkH 144
                     89*****************87666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.016121149IPR007087Zinc finger, C2H2
PROSITE patternPS000280123144IPR007087Zinc finger, C2H2
SuperFamilySSF563992.69E-12146193No hitNo description
Gene3DG3DSA:3.90.228.107.6E-9146371IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563992.69E-12222371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAARKLGSLL RQHFFSLFFL FVGCFFFPKG GDCKHKKRKK KKLRTVSSGS GSGLSSSWLS  60
LKRFFLSTTR ISKPRSQTHP NGQLTTLTSA RSSHNSLVTL VQPDPETRVE NGLSDDSEEI  120
FSCTTCGEIF PKTNLLEHHF AVKHAVTELT DGESSTNIVK IIFKSGWPDL NNKAPEIHRI  180
LKIHNSPKIL ARFEEYREFV KAKAARTSSG GGGGGGRRWD DERCVADGNE LLRFYCSTFM  240
CDLGQNGNSN LCGHQYCSVC GIIGAGFSPK LDGIATLATG WRGHAAVSEE VEEEFGFMNV  300
KRAMLVCRVV AGRVGCDLIA DDDVDKSDGG YDSLVGEGSG SKSGALLRID DEELLVFNPR  360
AVLPCFVIVY TV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13343KHKKRKKKKLR
23539KKRKK
33541KKRKKKK
43743RKKKKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531330.0AK353133.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-11-B23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141016.10.0PREDICTED: uncharacterized protein LOC103864982
TrEMBLM4FFW90.0M4FFW9_BRARP; Uncharacterized protein
STRINGBra039993.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-158C2H2 family protein