PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140933.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 148aa MW: 16028.6 Da PI: 10.1545 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F++ L H +H XP_009140933.1 33 FACKTCNKEFPSFQALGGHRASH 55 78**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.0005 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F L H+r+H XP_009140933.1 77 HECPICGAEFAVGQALGGHMRKH 99 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.93E-8 | 31 | 99 | No hit | No description |
Pfam | PF13912 | 6.4E-13 | 32 | 57 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.369 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.23 | 33 | 55 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.9E-10 | 77 | 101 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 77 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.64 | 77 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.063 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MEKEREIEMI NKMASCLIYL SKAHQHDTKS RVFACKTCNK EFPSFQALGG HRASHRRSAA 60 LEGHAPPSPK RVKPVKHECP ICGAEFAVGQ ALGGHMRKHR GGGGSRSLAP APVTMKKSGG 120 GNGKRVLCMD LNLTPGENDD LKLELGML |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140933.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007184 | 1e-105 | AC007184.4 Arabidopsis thaliana chromosome 2 clone T11P11 map mi54, complete sequence. | |||
GenBank | BT029330 | 1e-105 | BT029330.1 Arabidopsis thaliana At2g28710 mRNA, complete cds. | |||
GenBank | CP002685 | 1e-105 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140933.1 | 1e-106 | PREDICTED: zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 2e-36 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A078GZ30 | 1e-104 | A0A078GZ30_BRANA; BnaA04g16610D protein | ||||
TrEMBL | A0A397ZLS0 | 1e-104 | A0A397ZLS0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F3M8 | 1e-104 | M4F3M8_BRARP; Uncharacterized protein | ||||
STRING | Bra035678.1-P | 1e-105 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 2e-79 | C2H2 family protein |