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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140563.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 324aa MW: 35225.1 Da PI: 10.5749 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.4 | 4.5e-31 | 250 | 308 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp+++++tYegeH+h+k XP_009140563.1 250 DEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDPTMLIVTYEGEHRHQK 308 9************************8766****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.0E-16 | 198 | 246 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.8E-32 | 236 | 308 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.113 | 243 | 309 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.45E-26 | 246 | 308 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 248 | 308 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.7E-27 | 250 | 307 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MTVDIMRFPK MEDQTAMQEA ASQGLKSMEH LISVLSNRPK DHNAGCSEIT DFTVSKFKKV 60 ISLLNRTGHA RFRRGPVQSP LSSSSSSAAS PPLPPVSQPT PPSQLSPTAP VVTPGRFVQS 120 HPQSLTLDFT RPTVFGAKTK STEIVEFAKE SFSVSSNSSF MSSAITGDGS VSKGSSIFLA 180 PAPVASSGKP PLAGLPYRKR CFEHDHSQNF SGKISGSGSG KCHCKKRKNR MKRSVRVPAI 240 SAKIADIPVD EYSWRKYGQK PIKGSPHPRG YYKCSTFRGC PARKHVERAL DDPTMLIVTY 300 EGEHRHQKSA MNENISSSLV FGSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-20 | 236 | 307 | 2 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.1196 | 0.0 | leaf| root| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00278 | DAP | Transfer from AT2G24570 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140563.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ384102 | 0.0 | FJ384102.1 Brassica napus cultivar Westar WRKY transcription factor 17 (WRKY17) mRNA, WRKY17-2 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140563.1 | 0.0 | PREDICTED: probable WRKY transcription factor 17 isoform X2 | ||||
Swissprot | Q9SJA8 | 1e-172 | WRK17_ARATH; Probable WRKY transcription factor 17 | ||||
TrEMBL | M4ETF3 | 0.0 | M4ETF3_BRARP; Uncharacterized protein | ||||
STRING | Bra032084.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24570.1 | 1e-153 | WRKY DNA-binding protein 17 |
Publications ? help Back to Top | |||
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