PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TALE

Protein Properties

Length: 645aa MW: 71303.8 Da PI: 7.138

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009140492.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.8	1e-09	454	491	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + XP_009140492.1 454 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 491 665569******************************88 PP
2	BELL	123.6	7.7e-40	312	383	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ XP_009140492.1 312 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 383 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.5E-83	238	381	IPR006563	POX domain
Pfam	PF07526	1.2E-51	244	380	IPR006563	POX domain
PROSITE profile	PS50071	12.86	432	495	IPR001356	Homeobox domain
SMART	SM00389	1.1E-9	435	499	IPR001356	Homeobox domain
CDD	cd00086	2.08E-12	435	496	No hit	No description
SuperFamily	SSF46689	1.28E-17	436	502	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-28	438	501	IPR009057	Homeodomain-like
Pfam	PF05920	2.9E-18	452	491	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MGLATTTVPH HRHHHKTLDN SLDSMSQDYH HHQGIFSFSS GFHRPSSSHQ EEVEESAVSG 60 AQIPVYETAG MLSEMFTYPG GGNGGSGEIL DHSTKQLLEQ QNRHNNNNST LHMLLPNHHH 120 QGYGYPNEQQ FTWPSSSDHH QSQGDMIGTV HVEGGKGLSL SLSSSLEAAA AAAKAEEYRS 180 IYCAAVDGTS SSSNASVHHH QFNQLKTLLL DNSSSHQHQV MGHFGSSSSS PMAASSSIGG 240 IYTLRNSKYT KPAQELLEEF CSVGRGHHFK KNKLSRNNSN PNTSGCGGGG GGGGSSSTAG 300 AANDSPPLSP ADRIEHQRRK VKLLSMLEEV DRRYNHYCEQ MQMVVNSFDQ VMGYGAAVPY 360 TTLAQKAMSR HFRCLKDAVA VQLKRSCELL GDKESAGAAS SGLTKGETPR LRLLEQSLRQ 420 QRAFHHMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLNP YPSDADKHLL ARQTGLSRNQ 480 VSNWFINARV RLWKPMVEEM YQQEAKEREE EELGENKKED YQHQRRHQQT NNKDTKPNES 540 NFTLVQTITA QTPTTTMMTS TPHENDRSSL PPSTSVANAP SLGVSGAFTV STCQQDVSDF 600 HVEDGVIRFG TKQAGDVSLT LGLRHTGNMP DNKNPSFSVR DFGDF

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MGLATTTVPH HRHHHKTLDN SLDSMSQDYH HHQGIFSFSS GFHRPSSSHQ EEVEESAVSG  60
AQIPVYETAG MLSEMFTYPG GGNGGSGEIL DHSTKQLLEQ QNRHNNNNST LHMLLPNHHH  120
QGYGYPNEQQ FTWPSSSDHH QSQGDMIGTV HVEGGKGLSL SLSSSLEAAA AAAKAEEYRS  180
IYCAAVDGTS SSSNASVHHH QFNQLKTLLL DNSSSHQHQV MGHFGSSSSS PMAASSSIGG  240
IYTLRNSKYT KPAQELLEEF CSVGRGHHFK KNKLSRNNSN PNTSGCGGGG GGGGSSSTAG  300
AANDSPPLSP ADRIEHQRRK VKLLSMLEEV DRRYNHYCEQ MQMVVNSFDQ VMGYGAAVPY  360
TTLAQKAMSR HFRCLKDAVA VQLKRSCELL GDKESAGAAS SGLTKGETPR LRLLEQSLRQ  420
QRAFHHMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLNP YPSDADKHLL ARQTGLSRNQ  480
VSNWFINARV RLWKPMVEEM YQQEAKEREE EELGENKKED YQHQRRHQQT NNKDTKPNES  540
NFTLVQTITA QTPTTTMMTS TPHENDRSSL PPSTSVANAP SLGVSGAFTV STCQQDVSDF  600
HVEDGVIRFG TKQAGDVSLT LGLRHTGNMP DNKNPSFSVR DFGDF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	7e-16	441	498	1	58	Homeobox protein Meis1
4xrs_B	7e-16	441	498	1	58	Homeobox protein Meis1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	294	SGCGGGGGGGGS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.3699	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269\|PubMed:17873098}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009140492.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352811	0.0	AK352811.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-J15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140492.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q94KL5	0.0	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A078HQR5	0.0	A0A078HQR5_BRANA; BnaA04g13860D protein
TrEMBL	A0A397ZML5	0.0	A0A397ZML5_BRACM; Uncharacterized protein
STRING	Bo4g151860.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	0.0	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]