PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009140264.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 268aa MW: 30183.7 Da PI: 5.1026

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009140264.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.6	2.7e-08	129	169	10	50
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +NRe+A rs ++K eLe+kv++Le++ + L el+ XP_009140264.1 129 TLSNRESAARSKAKKALHESELEDKVETLETQIDILTAELK 169 579*******************************9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.2E-7	117	169	No hit	No description
SMART	SM00338	6.6E-7	120	184	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.14E-8	124	172	No hit	No description
Pfam	PF07716	1.7E-6	131	169	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDGHADIPPS YSGLSQYPRA NPFGDESSNR ATMPPPTGSS LPPFSLLLHI PQPFQFGSQN 60 FIPAGSSPSQ WMLSQVPHTM LESSSVGSGS SQPASVFSGL FNADQLSKIA ASDELKEMAE 120 SDPKHLKITL SNRESAARSK AKKALHESEL EDKVETLETQ IDILTAELKL EKRGRMTADD 180 ECVQFRIRLH AGEAHARLRE DLIQQLNGEV RRLIEEASVQ REEMSRLREE VSEYRRRESE 240 RMNANMLDQL NINQQFQEKP QQTNYNFE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009140264.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140264.1	0.0	PREDICTED: transcription factor VIP1-like
TrEMBL	A0A3P6D070	1e-169	A0A3P6D070_BRACM; Uncharacterized protein
STRING	Bra030310.1-P	1e-103	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23502	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	2e-21	bZIP family protein