PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140262.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 286aa    MW: 32344.2 Da    PI: 6.5539
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140262.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.71.1e-07149195450
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      kr +r+ +NRe+A rs ++K  +  eLe kv+ Le++ ++L   l+
  XP_009140262.1 149 PKRLKRRLSNRESAARSKEKKALQKFELEVKVERLETQIDTLTAVLK 195
                     59*************************************99986554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-6145202No hitNo description
SMARTSM003380.0031146207IPR004827Basic-leucine zipper domain
PfamPF077161.8E-7147193IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.358148200IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.59E-7150200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MALPPIAYMM PNSSSAEGKA YKRASSDSIR LNSLMASNRT YPNPIDMPVG VRTQNESVGD  60
KSSSHNEDVN VNVDVPNGNK RRAANEIAPP RRIWRSVSAG SSLNEAPSLP QGVSVDVGND  120
TAFGGMFTPE QLRKIASSDE LKEMAASDPK RLKRRLSNRE SAARSKEKKA LQKFELEVKV  180
ERLETQIDTL TAVLKLEKRE RMAERMAADH ECARLRTSLD GADEQARVHH DLIEQLNGEV  240
RRLTEEASRL REEVNEYRRR ESERMNANML EQLNINQFEE TDYNFE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154PKRLKRR
2148155PKRLKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140262.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140262.10.0PREDICTED: transcription factor RF2b-like
TrEMBLA0A397ZM420.0A0A397ZM42_BRACM; Uncharacterized protein
STRINGBra030312.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1940967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-30bZIP family protein