PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140098.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 174aa    MW: 20312 Da    PI: 8.6209
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140098.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.1e-3294152159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r a+dpk++++tYeg Hnh+
  XP_009140098.1  94 LDDGYRWRKYGQKSVKNNGHPRSYYRCTYHTCNVKKQVQRLAKDPKIIVTTYEGIHNHP 152
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-3281152IPR003657WRKY domain
SuperFamilySSF1182902.48E-2886153IPR003657WRKY domain
PROSITE profilePS5081129.40289154IPR003657WRKY domain
SMARTSM007748.0E-3794153IPR003657WRKY domain
PfamPF031063.8E-2695152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MERQDIIPHT LSLDVENNNN TFSSFVDETL MMMPPLALPG QVEPSSSSWC PTSFHMPTQP  60
HENDQIGDHG KKKDKRSRKV PRIEFHTRSD DDVLDDGYRW RKYGQKSVKN NGHPRSYYRC  120
TYHTCNVKKQ VQRLAKDPKI IVTTYEGIHN HPCEKLMETL NPLLRQLQFL SSFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2685151874Probable WRKY transcription factor 4
2lex_A3e-2685151874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140098.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300420.0KF430042.1 Brassica rapa WRKY transcription factor 24 (WRKY24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140098.11e-130PREDICTED: probable WRKY transcription factor 24
SwissprotQ9FFS32e-95WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLM4E9N41e-129M4E9N4_BRARP; Uncharacterized protein
STRINGBra025490.1-P1e-130(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.14e-89WRKY DNA-binding protein 24