PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139992.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 455aa    MW: 49302.7 Da    PI: 8.62
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07134154526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+f+ + G Ck Gd+C+F H+
  XP_009139992.1 134 VCKFWKA-GNCKKGDQCSFLHS 154
                     5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-6127154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-6129154IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6129155IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-5134154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835134156IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.01E-42154208IPR017986WD40-repeat-containing domain
SMARTSM003201.7E-4160199IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.1E-42162450IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029419.196167371IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.984167208IPR001680WD40 repeat
PfamPF117151.5E-5182214No hitNo description
PROSITE patternPS006780186200IPR019775WD40 repeat, conserved site
PRINTSPR003204.2E-8186200IPR020472G-protein beta WD-40 repeat
SMARTSM0032085239276IPR001680WD40 repeat
SuperFamilySSF509781.01E-42246451IPR017986WD40-repeat-containing domain
SMARTSM003208.7E-4284322IPR001680WD40 repeat
PfamPF004006.8E-5288322IPR001680WD40 repeat
PROSITE profilePS5008210.375306331IPR001680WD40 repeat
PROSITE patternPS006780309323IPR019775WD40 repeat, conserved site
PRINTSPR003204.2E-8309323IPR020472G-protein beta WD-40 repeat
SMARTSM003201.7E-5325362IPR001680WD40 repeat
PfamPF004000.0019327361IPR001680WD40 repeat
PROSITE profilePS500829.305332361IPR001680WD40 repeat
PRINTSPR003204.2E-8349363IPR020472G-protein beta WD-40 repeat
SMARTSM00320140368409IPR001680WD40 repeat
SMARTSM003202.6412449IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDEAATAIVS VVQSAKVSVF LDVFYSMSYK APRRCSNGRN FGVERHQDFA ADIAPRRPYE  60
NKGPNKWSRN LVWTASDGNK PRKNGNTYGS TKSQVSGTAA SVSQQRKNAG YGQVSDTRGW  120
GSSNRGSPKS KECVCKFWKA GNCKKGDQCS FLHSWSCLPG LVMVAALEGH KKDLKGIALP  180
QGSDKLFSAS SDGTLRIWDC HTGQCVHTIN LQAEAGSLIC EGPWVFLGLP NAVKAFNVQT  240
SKDLHLNGVV GQVRAMTVGN GMLFAGTTSG SISVWKATDS ESDPFTYLTS LEGHHSGEVT  300
CFIVGGHRLY SGSVDRTIKV WDLNTLECTM TLRQHTDAVT SLLCWDQYLI SSSLDGTIKV  360
WACSDNGSLK VTNTRRHEQS VHTLCGMSDA EGKPIMFCSY QNGTVGICDL PSFEERGKMF  420
STNTVGTITI GPEGLLFTGD KSGKLRVWSL AGTKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A7e-1916745011323Tako8
6g6n_A7e-1916745011323Tako8
6g6n_B7e-1916745011323Tako8
6g6n_C7e-1916745011323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.248510.0silique
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139992.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139992.20.0PREDICTED: zinc finger CCCH domain-containing protein 59 isoform X1
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A397ZNG70.0A0A397ZNG7_BRACM; Uncharacterized protein
TrEMBLM4E9X90.0M4E9X9_BRARP; Uncharacterized protein
STRINGBra025586.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein