PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 349aa MW: 40117.1 Da PI: 6.6385

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009139966.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.4	2.2e-19	17	64	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++ +s + +++ R+ +i+KKA+EL +LCd+e++vi ++++g+l++++ XP_009139966.1 17 SSTHSLAATSLKSRLLTIFKKAQELTTLCDIEACVIHYGPDGELKTWP 64 7788999****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.054	25	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-14	27	99	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-10	29	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MRSPRPSSCS KCSSSPSSTH SLAATSLKSR LLTIFKKAQE LTTLCDIEAC VIHYGPDGEL 60 KTWPEDRDKV KDLALRYIQL DEAKRRKKSV NLYEFLNKMK EKKTMINKKA KRNVEELKYP 120 ISDHYSPHQI NQLIHSLELS YSTLQERRRF LAAKANLEDR QHSLNPSHFT QESMLKNQEL 180 CVNDKNSNNF QHLCVSDYSA VQESALRYHS MLYDQNMMCM GNINNVQHPW LSNAHPPELQ 240 EPNQLMQREL NYGFDQNMCM SDTTNSFSVV DPCLPNMLPD DFCFDFQDPY GGNMVGNPSF 300 SQDFFPDMSS SYVYGSRLLQ ESTLPSLSSS NITNENSEIP SNLPDDHRK

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MRSPRPSSCS KCSSSPSSTH SLAATSLKSR LLTIFKKAQE LTTLCDIEAC VIHYGPDGEL  60
KTWPEDRDKV KDLALRYIQL DEAKRRKKSV NLYEFLNKMK EKKTMINKKA KRNVEELKYP  120
ISDHYSPHQI NQLIHSLELS YSTLQERRRF LAAKANLEDR QHSLNPSHFT QESMLKNQEL  180
CVNDKNSNNF QHLCVSDYSA VQESALRYHS MLYDQNMMCM GNINNVQHPW LSNAHPPELQ  240
EPNQLMQREL NYGFDQNMCM SDTTNSFSVV DPCLPNMLPD DFCFDFQDPY GGNMVGNPSF  300
SQDFFPDMSS SYVYGSRLLQ ESTLPSLSSS NITNENSEIP SNLPDDHRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009139966.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009139966.1	0.0	PREDICTED: agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	2e-56	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	M4EA00	0.0	M4EA00_BRARP; Uncharacterized protein
STRING	Bra025607.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65330.1	8e-58	AGAMOUS-like 78

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]