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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009139966.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
M-type_MADS |
Protein Properties |
Length: 349aa MW: 40117.1 Da PI: 6.6385 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009139966.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 60.4 | 2.2e-19 | 17 | 64 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
++ +s + +++ R+ +i+KKA+EL +LCd+e++vi ++++g+l++++
XP_009139966.1 17 SSTHSLAATSLKSRLLTIFKKAQELTTLCDIEACVIHYGPDGELKTWP 64
7788999****************************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MRSPRPSSCS KCSSSPSSTH SLAATSLKSR LLTIFKKAQE LTTLCDIEAC VIHYGPDGEL 60 KTWPEDRDKV KDLALRYIQL DEAKRRKKSV NLYEFLNKMK EKKTMINKKA KRNVEELKYP 120 ISDHYSPHQI NQLIHSLELS YSTLQERRRF LAAKANLEDR QHSLNPSHFT QESMLKNQEL 180 CVNDKNSNNF QHLCVSDYSA VQESALRYHS MLYDQNMMCM GNINNVQHPW LSNAHPPELQ 240 EPNQLMQREL NYGFDQNMCM SDTTNSFSVV DPCLPNMLPD DFCFDFQDPY GGNMVGNPSF 300 SQDFFPDMSS SYVYGSRLLQ ESTLPSLSSS NITNENSEIP SNLPDDHRK
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |