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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009139241.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SRS | ||||||||
Protein Properties | Length: 189aa MW: 21377.1 Da PI: 10.369 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 165.8 | 2.5e-51 | 34 | 178 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 ++ C+dCGn+akk+C++eRCRtCCksrg++CathvkstW+p++ ++++++++++ss++ +++k+ + ++s++ s l +++s +++ XP_009139241.1 34 EEKVCRDCGNRAKKECSFERCRTCCKSRGYKCATHVKSTWIPSSSSSSHHHHHHSPSSDR------NRNKKLKIDSSNNPSVLIVPTTTSRRQER 122 6789****************************************9999877777664443......33444444445555566666655555555 PP DUF702 99 eletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 ++ lP +++++avf+++rv+++++ ++ e++Yq++v+i Ghvf+G+L+++G+++ XP_009139241.1 123 SFRE-GLPGKIEAPAVFKRTRVTAISNeEQSEIGYQATVTIHGHVFRGFLHYHGVDH 178 5544.4*******************9857789***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 9.3E-46 | 36 | 177 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.0E-25 | 37 | 77 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.5E-26 | 128 | 176 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MLGLRNIILL PPPSQIIHPS VEDNNNKSRN SNVEEKVCRD CGNRAKKECS FERCRTCCKS 60 RGYKCATHVK STWIPSSSSS SHHHHHHSPS SDRNRNKKLK IDSSNNPSVL IVPTTTSRRQ 120 ERSFREGLPG KIEAPAVFKR TRVTAISNEE QSEIGYQATV TIHGHVFRGF LHYHGVDHNK 180 AFPCLSNKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009139241.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009139241.1 | 1e-138 | PREDICTED: protein SHI RELATED SEQUENCE 6 | ||||
Swissprot | Q9M2U4 | 4e-90 | SRS6_ARATH; Protein SHI RELATED SEQUENCE 6 | ||||
TrEMBL | M4DE97 | 1e-115 | M4DE97_BRARP; Uncharacterized protein | ||||
STRING | Bra014818.1-P | 1e-116 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11959 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54430.1 | 9e-90 | SHI-related sequence 6 |
Publications ? help Back to Top | |||
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