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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009139189.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 24186.4 Da PI: 8.3199 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.9 | 9.9e-10 | 44 | 93 | 2 | 53 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 + h +Er+RR+++ + f+ Lr++lP ++K ++ + Av++Ik+ XP_009139189.1 44 KLLHRDIERQRRQEMATLFASLRSHLPLqY---VKGKRAVSDHVNGAVNFIKD 93 6679************************66...9999999***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-12 | 39 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.547 | 42 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-7 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.4E-8 | 44 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.17E-7 | 47 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDPYQNPSPK GYQRQRPFGS AGEGGSSGGS DIPREIDDNK KKKKLLHRDI ERQRRQEMAT 60 LFASLRSHLP LQYVKGKRAV SDHVNGAVNF IKDTETRIKE LSARRDELSR ETCQTYKSSP 120 DPARTGSELG KSYPASVMVQ PCVSGFEVAV SSNSSGPEAL PLSRVLETLQ ELGLEVISCL 180 TTRVNERLMH TIQVEVNSFG CLDLAWLQQK LVEELIL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.30273 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009139189.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009139189.1 | 1e-161 | PREDICTED: transcription factor bHLH126-like | ||||
Refseq | XP_009139202.1 | 1e-161 | PREDICTED: transcription factor bHLH126-like | ||||
Refseq | XP_013670566.1 | 1e-161 | transcription factor bHLH126 | ||||
Swissprot | Q9STJ6 | 1e-118 | BH126_ARATH; Transcription factor bHLH126 | ||||
TrEMBL | A0A078J1H5 | 1e-159 | A0A078J1H5_BRANA; BnaA01g35240D protein | ||||
TrEMBL | A0A398ATR7 | 1e-159 | A0A398ATR7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DBM9 | 1e-159 | M4DBM9_BRARP; Uncharacterized protein | ||||
STRING | Bra013889.1-P | 1e-160 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 1e-121 | bHLH family protein |