PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009139087.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 438aa    MW: 48851.3 Da    PI: 6.639
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009139087.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.33.4e-1371132263
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      + kr  r+ +NRe+A  sRqR+k ++eeLe+k+k+L++  ++L ++++    e a+l+ +v
  XP_009139087.1  71 DDEKRDARLVRNRESALLSRQRRKHYVEELEDKAKSLQSVITDLNSKVSYFMSENATLRHKV 132
                     5679*********************************************9999999998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-1170134IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.82972129IPR004827Basic-leucine zipper domain
PfamPF001709.9E-1273132IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.54E-1174130No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-1474132No hitNo description
CDDcd147047.04E-1875126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAEPAVDSFY NSSFEIENSF SDLDVDFELT FDDLYFPSEN ESFFIPVDVE EEATTTCKTS  60
MTKRKKEIEE DDEKRDARLV RNRESALLSR QRRKHYVEEL EDKAKSLQSV ITDLNSKVSY  120
FMSENATLRH KVGPGKGMCW PPLVPWMPYL GSHQVVPLLP IPRLKPQRPV AKVKKTKKVA  180
SVSVLGLLFC LFLFGALVPI IVNVSYGGRV LDVSVNSSSG RGNLSATENY VPLGNGSELL  240
GASLFVPRNE KLVKLDGNLI IHSILASEED TASDSTRTRD MSKYLNTEKR KTDDSKEKLN  300
STRTNGEVQQ WFREGVAGPM FSSGMCTEVF QFDVSSTSGA TFPTSPATQQ HKGKNNRRIL  360
RGGHPLSNLN LSKDQNSSNK ENSSTNKSFP SMVVSVLIDP REESSDGVFI VVLVDNVKYV  420
TYSCVLPRPE EVPHLVTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18092RNRESALLSRQRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.182274e-33bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in stress responses. {ECO:0000250|UniProtKB:O22208}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009139087.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139087.10.0PREDICTED: bZIP transcription factor 49
SwissprotQ9LXX41e-127BZP49_ARATH; bZIP transcription factor 49
TrEMBLM4DDW10.0M4DDW1_BRARP; Uncharacterized protein
STRINGBra014680.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2027756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56660.11e-105basic region/leucine zipper motif protein 49
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]