PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009139074.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 26383.9 Da PI: 8.2125 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.2 | 1.6e-09 | 52 | 98 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h e Er RR+riNs++++Lr ll + +K +Ka+ L k+v+ +++L XP_009139074.1 52 RKHREGERMRRERINSSLNKLRNLLSCN-----PKTDKATLLAKVVQRVNEL 98 5699*********************997.....7***********9987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.09 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-11 | 49 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-7 | 52 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-10 | 53 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-8 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 5.95E-5 | 134 | 211 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 2.0E-5 | 135 | 211 | No hit | No description |
CDD | cd04873 | 7.66E-4 | 136 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MQPEISDQIL YSFLIGGSCA SSTTTTTTRS SFYPFAMEDT SSQDKALATT LRKHREGERM 60 RRERINSSLN KLRNLLSCNP KTDKATLLAK VVQRVNELKQ QTLEISNENV PSETDEISVL 120 NFENCSNDDG RIIFKLSFCC EDRPDLMQDL VETLKSLQME TLYAYMTTIG GRTRNDLVVV 180 GNKEQHSVES VKLLQNAFES LLERSNQSVM MGHGGGRERS KRRRPLDHIK RV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 63 | RMRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009139074.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009139074.1 | 1e-172 | PREDICTED: putative transcription factor bHLH107 | ||||
Swissprot | Q9LET0 | 1e-101 | BH107_ARATH; Putative transcription factor bHLH107 | ||||
TrEMBL | A0A397ZHI3 | 1e-171 | A0A397ZHI3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DDV3 | 1e-171 | M4DDV3_BRARP; Uncharacterized protein | ||||
STRING | Bra014672.1-P | 1e-172 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3642 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 1e-90 | bHLH family protein |
Publications ? help Back to Top | |||
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