 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009139023.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
C2H2 |
| Protein Properties |
Length: 364aa MW: 41072.7 Da PI: 7.4984 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009139023.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.1 | 3.2e-05 | 204 | 223 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
XP_009139023.1 204 FSCPVCFKTFNRYNNMQMHM 223
89*****************9 PP
|
| 2 | zf-C2H2 | 14.5 | 0.00011 | 288 | 310 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C +Cgk F + + ++H +++
XP_009139023.1 288 FMCRKCGKAFAVRGDWRTHEKNC 310
89*****************9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 364 aa
Download sequence Send
to blast |
MADPYSNFFT GWFKPNPFHN YLNSSSNPSS PLPPPSSFFL IPHPGDLRRP PPTTPPSPPP 60
REALPLLSLS PANKQQNHHD LIQEPPSTSM DVDYGHHHHQ VDHNLDKDDH DVTVALSIGL 120
PSPSTRDMAS LFMMSSSSSS SRTTNHHENI NDKKDPHNDY HHGSAGGGED DDEDSAGGCR 180
ISRLNKYQYW IPTPSQILIG PTQFSCPVCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT 240
QPTGMLRLPC YCCSPGCRNN IDHPRAKPLK DFRTLQTHYN RKHGIKPFMC RKCGKAFAVR 300
GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKAFGNGHG AYGIDGFDEE DEPASEVEQL 360
DNDQ
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189469 | 0.0 | AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence. |
