PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009139008.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 346aa MW: 38182.6 Da PI: 6.379

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009139008.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6e-09	188	235	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq XP_009139008.1 188 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 235 8***********************9....889**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.49E-9	182	239	No hit	No description
SuperFamily	SSF47459	1.83E-15	182	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-15	184	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.684	184	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	188	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-8	190	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MDLSGRFGAR SGDGVPFREA AALESLHIGG GEEFRQMVPP ENAGGFAALL ELPPTQAVEL 60 LHSSSSSASQ ATTLHSLGTL SFPSNPLLME RASRFSVIAT DNQQNGNVSG ETTTTSSVPS 120 NEHIKTEPAE TETCDQAAVE KQSNRCGKRK ELDKKVKSST KKKNKSSEEN EKLPYVHVRA 180 RRGQATDSHS LAERARREKI NARMKLLQEL VPGCDKIQGT ALVLDEIINH VQSLQRQVEM 240 LSMRLASVNP RIDFNLDTIL ASENGSLMDG SFNGATMQLA WPLQVMETEQ SYHHRQLQQP 300 PSQQWPFDGL NQPVWGREEN QDHGNDHNNL MVGSTSLHPN QVKMEL

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MDLSGRFGAR SGDGVPFREA AALESLHIGG GEEFRQMVPP ENAGGFAALL ELPPTQAVEL  60
LHSSSSSASQ ATTLHSLGTL SFPSNPLLME RASRFSVIAT DNQQNGNVSG ETTTTSSVPS  120
NEHIKTEPAE TETCDQAAVE KQSNRCGKRK ELDKKVKSST KKKNKSSEEN EKLPYVHVRA  180
RRGQATDSHS LAERARREKI NARMKLLQEL VPGCDKIQGT ALVLDEIINH VQSLQRQVEM  240
LSMRLASVNP RIDFNLDTIL ASENGSLMDG SFNGATMQLA WPLQVMETEQ SYHHRQLQQP  300
PSQQWPFDGL NQPVWGREEN QDHGNDHNNL MVGSTSLHPN QVKMEL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.5281	0.0	bud\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009139008.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189469	0.0	AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009139008.1	0.0	PREDICTED: transcription factor bHLH60-like isoform X1
Swissprot	Q3EAI1	1e-165	BH060_ARATH; Transcription factor bHLH60
TrEMBL	M4DDN5	0.0	M4DDN5_BRARP; Uncharacterized protein
STRING	Bra014603.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-160	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]