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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009138877.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 287aa MW: 32212.4 Da PI: 9.8407 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009138877.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 55.9 | 1.9e-17 | 1 | 120 | 1 | 100 |
GAGA_bind 1 mdddgsre..rnkg.yye...................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernka 73
m++ g++e r + yy+ ++++l +++++ms++aerda+++er+ al++k++a+a+rd+a+ rdkal+ r++a
XP_009138877.1 1 MESGGQYEngRYNPdYYKegthsvwnampnhhqtkedQHNALV--MNQKIMSILAERDAALKERDDALAAKQEALAARDEALDLRDKALSLRDNA 93
7888888778888889989999999999999888765556677..99************************************************ PP
GAGA_bind 74 lverdnkllalllvenslasalpvgvq 100
++erd++l al+++e++l+ l+ +
XP_009138877.1 94 ILERDSALSALQFREHNLNYILSRAKL 120
*****************9955544433 PP
|
| 2 | GAGA_bind | 247.7 | 7.9e-76 | 142 | 286 | 154 | 300 |
GAGA_bind 154 qrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
+ +k++k++k++ k +++ +++v++++ ++ +++++s ++ln v++De+t+PvP+C+CtG+ r CYkWGnGGWqS+CCttt+S yPLP+++
XP_009138877.1 142 APSKRKKKRKQETRSKGKRVGEDHVASPG--KKCRKDWDSNVVGLNLVTFDETTMPVPMCTCTGTARHCYKWGNGGWQSSCCTTTLSLYPLPQMP 234
34455555555555555666777788888..579************************************************************* PP
GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
++r++R++grKmS+++f++lL++La++G+dls pvDLkd+WA+HGtn+++ti
XP_009138877.1 235 NKRHSRVGGRKMSGNVFSRLLSRLAGQGHDLSSPVDLKDYWARHGTNRYITI 286
***************************************************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 287 aa
Download sequence Send
to blast |
MESGGQYENG RYNPDYYKEG THSVWNAMPN HHQTKEDQHN ALVMNQKIMS ILAERDAALK 60
ERDDALAAKQ EALAARDEAL DLRDKALSLR DNAILERDSA LSALQFREHN LNYILSRAKL 120
GASQSSHLPN PSPLSTIPHE AAPSKRKKKR KQETRSKGKR VGEDHVASPG KKCRKDWDSN 180
VVGLNLVTFD ETTMPVPMCT CTGTARHCYK WGNGGWQSSC CTTTLSLYPL PQMPNKRHSR 240
VGGRKMSGNV FSRLLSRLAG QGHDLSSPVD LKDYWARHGT NRYITIM
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 144 | 150 | KRKKKRK |
| 2 | 144 | 151 | KRKKKRKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189521 | 0.0 | AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence. |
