PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138527.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 305aa    MW: 35432.8 Da    PI: 9.3252
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138527.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.43.1e-13191249462
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      k+ +r+++NRe+A+rsR RK+  i +L++ v +L+ eN++Lk++l+  + + +++ ++
  XP_009138527.1 191 EKKRKRMESNRESAKRSRMRKQSHINNLRNQVNQLDLENRELKNRLQLFTYQLQRVNTD 249
                     6999******************************************9998888777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.9E-12182246No hitNo description
SMARTSM003381.9E-15188252IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.358190253IPR004827Basic-leucine zipper domain
PfamPF001701.1E-10191242IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.04E-10192244No hitNo description
CDDcd147025.68E-18193238No hitNo description
PROSITE patternPS000360195210IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MTQKLLIQYN IRLYTVFXSD XNTPLFVHKY QAPTMQFFPF PLLISLISLL GKNXAIMLST  60
VPAFSMSEPG LVNQFQGFQT GFTPWEWDCS DLFSVNQLPL EPAVPSPCFA ESDSGLVKIK  120
PGFDGIKPGS DENYTGFIKT KPGFDEAQSS HGVPDEPDSD DPKQWTAIVS LHSGEQNHNR  180
NKLIQPEMTE EKKRKRMESN RESAKRSRMR KQSHINNLRN QVNQLDLENR ELKNRLQLFT  240
YQLQRVNTDN IQLVAEQDIL RLRLSEMRRI LMIRRQQQWG LNNRRMIMTE QNPSTIMDHM  300
IYISK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138527.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138527.20.0PREDICTED: basic leucine zipper 63
TrEMBLA0A078GVQ01e-180A0A078GVQ0_BRANA; BnaA03g54260D protein
TrEMBLA0A397KYC51e-180A0A397KYC5_BRACM; Uncharacterized protein
STRINGBra017850.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.11e-121basic leucine-zipper 7