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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_009138496.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
LBD |
Protein Properties |
Length: 232aa MW: 25301.1 Da PI: 8.8512 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_009138496.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 93.5 | 2.4e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+C++C+vlr++C++ C+l+p+f +++q +++ +v+k+FG++ ++ +++a+pe +r+++++sl++eA+ r+ +Pv+Ga+g++ +++++++q+
XP_009138496.1 2 SCNGCRVLRKGCSETCILRPCFqwiesAESQGHATLFVAKFFGRAGLMTFISAVPELNRPALFQSLLFEACGRTVNPVNGAAGLLGSGNWHVCQA 96
6*********************9999777889*************************************************************** PP
DUF260 91 kaelall 97
++e++l+
XP_009138496.1 97 AVETVLR 103
*998876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSETCILR PCFQWIESAE SQGHATLFVA KFFGRAGLMT FISAVPELNR 60 PALFQSLLFE ACGRTVNPVN GAAGLLGSGN WHVCQAAVET VLRGGTLRPI SDLLPSPSLI 120 SSNDSTVICT DIGRFSTSRT KLSTSDMKEP PVNRRRSKTE RSESVIDVQL NHRLDLTIPV 180 VPVPLLPPTP FRKVVNGERP GSPSEESVTT SCSENGIIGY NKRERKLLNL FV
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB473874 | 1e-115 | AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds. |
GenBank | AY072144 | 1e-115 | AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. |
GenBank | AY122976 | 1e-115 | AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds. |