PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 295aa MW: 33910.4 Da PI: 8.4744

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009138462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.1	1.1e-29	175	228	3	56
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 r+rW+++LH+rFv+a++ +GGs++AtPk+i+++mkv+gLt++++kSHLQkYR++ XP_009138462.1 175 RRRWSEDLHRRFVDALQMIGGSQVATPKQIKDIMKVDGLTNDEIKSHLQKYRMH 228 99**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.405	170	230	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-26	171	231	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-15	171	231	IPR009057	Homeodomain-like
Pfam	PF00249	3.5E-6	175	226	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	4.3E-25	175	228	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MVQTDTDQRM SLDLNLYSLA KPLSQFLNDV SKIKDNHSKL FEIDEYVGKL EEERKKIDVF 60 KRELPLCMLL MNEAIERLKE EASSVKLEID NKKNWMNSTQ LWISKTNPQL PSTNGEEDRC 120 VTQTCSNNNN SNQGGAILSF NVPPRPPPLS LRTPILTDYS SRIEQSHPIQ KKELRRRWSE 180 DLHRRFVDAL QMIGGSQVAT PKQIKDIMKV DGLTNDEIKS HLQKYRMHIH KHPAKILTAS 240 DQHGLSRSDS PQGPLVDRGL FSNNGHSSEE EEKSDGRSWK SESRRKRQGL LDLEL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.14814	2e-49	bud\| flower\| leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, inflorescence apex, floral primordia, stamen primordia, carpel primordia and ovules. {ECO:0000269\|PubMed:26903506}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009138462.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009138462.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	F4JRB0	1e-110	HHO5_ARATH; Transcription factor HHO5
TrEMBL	A0A397L466	0.0	A0A397L466_BRACM; Uncharacterized protein
STRING	Bra017795.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4922	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	1e-112	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]