PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138448.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 215aa    MW: 25356.2 Da    PI: 4.7909
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138448.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.9e-2057109557
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++++eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  XP_009138448.1  57 RKLSDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKN 109
                     5899***********************************************95 PP
2HD-ZIP_I/II122.91.5e-3955145292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kr+ls+eqv++LE+sF  e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+++++++++++rLe+e  +L+e+l 
  XP_009138448.1  55 RKRKLSDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNNLKNSHENVVADKCRLESELLQLKEQLY 145
                     8***************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.4E-1953114IPR001356Homeobox domain
PROSITE profilePS5007116.48755110IPR001356Homeobox domain
CDDcd000862.56E-1555111No hitNo description
SuperFamilySSF466892.35E-1856120IPR009057Homeodomain-like
PfamPF000463.7E-1757109IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.4E-2157117IPR009057Homeodomain-like
PRINTSPR000319.2E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000319.2E-690106IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MNHTMDDDQN LAFISQLYPD VYTQILPQEV KPPKRRRKEI KRAVATGDGS NCFFRKRKLS  60
DEQVNMLEMS FGDEHKLESE RKDRLAAELG LDPRQVAVWF QNRRARWKNK RLEEEYNNLK  120
NSHENVVADK CRLESELLQL KEQLYDAERE IQRLAERVER GSSNSPISSS VSVEANETPF  180
FEDYNVRDDG DDYNLFYPVP ENTYIDGLEW ANLYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13238PKRRRKE
23557RRKEIKRAVATGDGSNCFFRKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138448.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895491e-110AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138448.11e-159PREDICTED: homeobox-leucine zipper protein ATHB-40-like isoform X2
SwissprotO232081e-120ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLM4DMP51e-146M4DMP5_BRARP; Uncharacterized protein
STRINGBra017780.1-P1e-147(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-105homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]