 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009138447.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 217aa MW: 25556.4 Da PI: 4.7268 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009138447.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.4 | 7e-20 | 59 | 111 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
+++++eq++ Le F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+
XP_009138447.1 59 RKLSDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKN 111
5899***********************************************95 PP
|
| 2 | HD-ZIP_I/II | 122.9 | 1.6e-39 | 57 | 147 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+kr+ls+eqv++LE+sF e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+++++++++++rLe+e +L+e+l
XP_009138447.1 57 RKRKLSDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNNLKNSHENVVADKCRLESELLQLKEQLY 147
8***************************************************************************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MNHTMDDDQN LAFISQLYPD VYTQILPQEE AVKPPKRRRK EIKRAVATGD GSNCFFRKRK 60
LSDEQVNMLE MSFGDEHKLE SERKDRLAAE LGLDPRQVAV WFQNRRARWK NKRLEEEYNN 120
LKNSHENVVA DKCRLESELL QLKEQLYDAE REIQRLAERV ERGSSNSPIS SSVSVEANET 180
PFFEDYNVRD DGDDYNLFYP VPENTYIDGL EWANLYI
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 34 | 40 | PKRRRKE |
| 2 | 37 | 59 | RRKEIKRAVATGDGSNCFFRKRK |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189549 | 1e-108 | AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence. |
