PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009138339.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 279aa MW: 30979.6 Da PI: 4.5937 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.1 | 9e-20 | 14 | 104 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv++p+ +++s + +pk+f ++ + + ++t +l+ g +W+v + +k +g ++t+GW++F+++++Lk g+f++F +dg+++f v+ XP_009138339.1 14 FFKVFLPETASES--MAIPKSFNAHLQDP--LPQTAKLQGIGGGVWTVSF--KKIRGVAYFTSGWSKFAEDHELKHGEFLTFVYDGSHTF--EVS 100 8999966666665..8******8555644..899****************..********************************998888..888 PP EE-S CS B3 96 vfrk 99 vf + XP_009138339.1 101 VFGR 104 8766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.2E-24 | 10 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-25 | 10 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.24E-21 | 12 | 102 | No hit | No description |
PROSITE profile | PS50863 | 13.676 | 12 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-23 | 14 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-17 | 14 | 103 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.77E-6 | 184 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.54 | 188 | 276 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 6.033 | 241 | 279 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MSESDEDVAD LPRFFKVFLP ETASESMAIP KSFNAHLQDP LPQTAKLQGI GGGVWTVSFK 60 KIRGVAYFTS GWSKFAEDHE LKHGEFLTFV YDGSHTFEVS VFGRSECKEI RAVVETVNLS 120 DANSDEEEEE DSSVVAADSN EGDDPSFHAG EDDEVSQSIN PVDSDDTVSV AEVVAGFPNL 180 EVESNPCFTT TLKKRIYDVL IPAAVVKEHG LTFCDRIKYI DGEGILDGAI LNCSYYGISF 240 KGWGRICRRN RLKENDTVHC EMLHIRKKVH SIKITITRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 3e-17 | 13 | 107 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009138339.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189222 | 0.0 | AC189222.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010M19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138339.1 | 0.0 | PREDICTED: B3 domain-containing protein REM20-like isoform X1 | ||||
Refseq | XP_009138340.1 | 0.0 | PREDICTED: B3 domain-containing protein REM20-like isoform X1 | ||||
Swissprot | Q8LAV5 | 7e-87 | REM20_ARATH; B3 domain-containing protein REM20 | ||||
TrEMBL | A0A3P5ZVW2 | 1e-174 | A0A3P5ZVW2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DMF9 | 1e-174 | M4DMF9_BRARP; Uncharacterized protein | ||||
STRING | Bra017692.1-P | 1e-175 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 3e-83 | B3 family protein |
Publications ? help Back to Top | |||
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