PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009138221.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 350aa    MW: 38658.5 Da    PI: 4.842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009138221.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102803201055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_009138221.1 280 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 320
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-14272336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-12275329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-12279324No hitNo description
PfamPF000101.3E-7280320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSA SGITGGDHHG LYWSLGSHHN  60
HLTLMPEASS FCFSGESSSY SVGNSGYYAV VPPAAEENNN VPMDFGLEDA TINTNSYLVG  120
EETSECDVEK YSSGKTLFPL ETVVENHNEE KSILQSEISV TTTDHHQKSL TGSKKRSRAT  180
SADKNKRTKV SKRGQKNIEM SDDTNNGEED EGEKVKKRKS GTMMSRQNSS TTFCSEEESQ  240
CPSQDDGGEE EEDASKALNL NGKTRASRGA ATDPQSLYAR KRRERINERL RILQNLVPNG  300
TKVDISTMLE EAVHYVKFLQ LQIKLLSSDD LWMYAPIAFN GMDIGLNSPR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Roots. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009138221.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138221.10.0PREDICTED: transcription factor bHLH85-like
SwissprotQ84WK00.0BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A397L2S80.0A0A397L2S8_BRACM; Uncharacterized protein
TrEMBLM4F7A90.0M4F7A9_BRARP; Uncharacterized protein
STRINGBra036969.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-177ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]