PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137878.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 263aa    MW: 30201.9 Da    PI: 4.6476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-125799754
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      Er+RR+++N++++ Lr+++P+      +Kl+Ka+i++  ++Y+++L
  XP_009137878.1 57 VSERNRRQKLNQRLFALRSVVPNI-----TKLDKASIVKDSIDYMQKL 99
                    57*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1965099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.58E-105399No hitNo description
SuperFamilySSF474592.49E-1654120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-1656117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-105799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEDLEDEYKN YWETTMFFQN QELEFDSWPL EEAFSGSGDS SSPDGAATSP ASSKNVVSER  60
NRRQKLNQRL FALRSVVPNI TKLDKASIVK DSIDYMQKLI DQERRLEAEI RELESRSVLL  120
ENPIKDYDCI NNFLENQQQD LLDNNVTRSK KSRQMDYNTS GSSVAGLHNQ SLIEVLEMKV  180
TWMGERTVVV CITCSKRRET MLQLCKVLES LNLNIVTTNF SSFSSRLSTT LFLQADEEER  240
RTLETKIQTA IAAHNDPSCF INL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.242110.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137878.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137878.10.0PREDICTED: transcription factor bHLH27
RefseqXP_013738256.10.0transcription factor bHLH27-like
SwissprotQ700E31e-136BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A3P6A8Z00.0A0A3P6A8Z0_BRACM; Uncharacterized protein
STRINGBra024115.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.11e-111bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]