PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137834.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 366aa    MW: 41487.5 Da    PI: 7.4046
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.6e-08141161526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck Gd+C FaHg
  XP_009137834.1 141 ACPDFRK-GGCKKGDSCEFAHG 161
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.92136163IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6136162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-5136165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-6140163IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-6141161IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568171195IPR000571Zinc finger, CCCH-type
SMARTSM003560.53171194IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MTKHRQKKTK LFPLRQNMII GETRRTYPTV EIPTWTVSED FTTSELFSPA MNSPDCSMLE  60
ALAALQRYLP SNEPDPDSDP DLFGPDSPID AYSCDHFRMY DFKVRRCARG RSHDWTECPY  120
AHPGEKARRR DPAKYNYSGT ACPDFRKGGC KKGDSCEFAH GVFECWLHPA RYRTQPCKDG  180
GNCRRRVCFF AHSPDQLRCL HNRSPDRVDS FDVSSPVRRA FQLSVSPVSG SPPMSPRAGS  240
ETQSLSHSVV SSFRNLQFEK VKSFPSSYTN PLRCYQSGFG SPRGSILGHG FQSLPTTPIR  300
PESMDIWDNG LEEDPAMERV VESGRELRAK MFEKLSKENC MDRVEPDQDQ NSGEAPDVGW  360
VSELVM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.168450.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137834.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137834.10.0PREDICTED: zinc finger CCCH domain-containing protein 49
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLM4E5V30.0M4E5V3_BRARP; Uncharacterized protein
STRINGBra024157.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.10.0C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]