PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137790.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 303aa    MW: 33625.8 Da    PI: 9.1192
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137790.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1081.1e-33592001128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......tks 80 
                     lp+G++F+Ptd+e++  +L+ kv+++       ++++  +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+         +
  XP_009137790.1  59 LPAGVKFDPTDQEVL-GHLEGKVRDDArklhplIDEFIrTIDGEnGICYTHPEKLP-GVSKDGTVRHFFHRPSKAYTTGTRKRRKvytdsevGGE 151
                     799**********99.89******9996665442222223554445**********.666777899******************75655554337 PP

             NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      +W++tgk+++v++ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_009137790.1 152 TRWHKTGKTRPVFT-GGRVKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200
                     78************.9*************6658999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-3853219IPR003441NAC domain
PROSITE profilePS5100533.33459219IPR003441NAC domain
PfamPF023656.3E-1560200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MTWCNDSSDV QTVETIIPSP TVAESPEASF QVSCHKTCPS CGHKFKFHEQ AGIHDLPGLP  60
AGVKFDPTDQ EVLGHLEGKV RDDARKLHPL IDEFIRTIDG ENGICYTHPE KLPGVSKDGT  120
VRHFFHRPSK AYTTGTRKRR KVYTDSEVGG ETRWHKTGKT RPVFTGGRVK GYKKILVLYT  180
NYGKQKKPEK TNWVMHQYHL GTNEEEKEGE LVVSKIFYQT QPRQCSGSLS AAATAKERPY  240
LHGQHLGGGG SRHLYHNNGN VKGNCGGGSA GASEYYNNMP AIISFNQSGI QNHLVHGTQP  300
FIP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892630.0AC189263.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137790.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494590.0NAC73_ARATH; NAC domain-containing protein 73
TrEMBLM4E5Z30.0M4E5Z3_BRARP; Uncharacterized protein
STRINGBra024197.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.10.0NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]