PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137606.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 516aa    MW: 57304.9 Da    PI: 7.4528
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137606.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-30190247260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrK GqK+vkgsefprsYY+Ct+++C+vkk  ers+ d+++++i+Y+g+H+h+k
  XP_009137606.1 190 DDGYNWRKNGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQMTDIIYKGTHEHPK 247
                     8****************************************.***************85 PP
2WRKY106.81.1e-33340398159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_009137606.1 340 LDDGYKWRKYGQKVVRGNPNPRSYYKCTAPGCPVRKHVERASHDPKAVITTYEGKHNHD 398
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.309184248IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-25186248IPR003657WRKY domain
SuperFamilySSF1182902.22E-23187248IPR003657WRKY domain
SMARTSM007746.1E-31189247IPR003657WRKY domain
PfamPF031062.0E-23190246IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-37325400IPR003657WRKY domain
SuperFamilySSF1182901.83E-29332400IPR003657WRKY domain
PROSITE profilePS5081138.4335400IPR003657WRKY domain
SMARTSM007748.8E-39340399IPR003657WRKY domain
PfamPF031066.5E-26341398IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MNPQADNDRK ESQDSTARHN SAVGGGGGAR YRLMSPAKLP ISRCNDITIP PGMSPTSFLE  60
SPVFISNIKP EPSPTTGSLF KPRPVHVNSS SYTGRTLHQN TFTEHKSTEF EFRPPASNMV  120
YAEHRSEPPV QDHGSSHSPS SISETAASST DLSRPTPPPL QTPPTGSDQD ESVQTSQNDS  180
RGSTPSVLAD DGYNWRKNGQ KHVKGSEFPR SYYKCTHPNC EVKKLFERSH DGQMTDIIYK  240
GTHEHPKPQP GRRNSAAQEE RIEKGVYNLS QAIEQTGNNN PEVPPTTEDG GEVKDDLEEE  300
EDPFTKRRRL EGSMEITTPL VKPIREPRVV VQTLSEVDIL DDGYKWRKYG QKVVRGNPNP  360
RSYYKCTAPG CPVRKHVERA SHDPKAVITT YEGKHNHDVP TSKSTNHHVI QPRFRPDETT  420
DTISLNLGVG ISSDGPDHTS NERNQQLLIN QTHPNGVGFR FVHAAPMSYY HGSLNSGIHQ  480
YGSRETQNET RNGGVSSLNH SSYQYPHNIG RIQSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37188400877Probable WRKY transcription factor 4
2lex_A2e-37188400877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305309KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137606.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931550.0KM593155.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY81) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137606.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A397L1330.0A0A397L133_BRACM; Uncharacterized protein
STRINGBra019095.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein