 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009137577.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
ARF |
| Protein Properties |
Length: 610aa MW: 69163.4 Da PI: 6.4662 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009137577.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 77.7 | 1.2e-24 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f kvlt sd++++g +++ +k+a+e+ + ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +
XP_009137577.1 112 FTKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYKWKFKHIFRGQPRRHLLTTGWSTFVTSKKLVAGDTFVFL--RGE 202
89****************************9643..445569************************************************..449 PP
EE..EEEEE-S CS
B3 89 efelvvkvfrk 99
++el+v+v+r+
XP_009137577.1 203 NGELRVGVRRA 213
999******97 PP
|
| 2 | Auxin_resp | 112.3 | 4.7e-37 | 238 | 316 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82
a ha++t+s+F+v+Y+Pr+ s+F+++v+k+++a+++k+svGmRfkm+fe++ds+err+sGtvvgv+d++p +W++SkWrsL
XP_009137577.1 238 ACHATQTRSMFTVYYKPRT--SQFIISVNKYLEAMNSKFSVGMRFKMRFEGDDSPERRFSGTVVGVQDCSP-HWKDSKWRSL 316
6899**************6..9*************************************************.********98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 610 aa
Download sequence Send
to blast |
MTIGEHMYEE LWKLSAGPLV DVPQAEERVY YFPQGHMEQL EASTQQDLNT MKPLFDLPPK 60
ILCRVMNVRL QAEKDTDEVY AQIMLMPEGT VDEPMSPDPS PPELQKPKFH SFTKVLTASD 120
TSTHGGFSVL RKHATECLPP LDMTQQTPTQ ELVAEDVHGY KWKFKHIFRG QPRRHLLTTG 180
WSTFVTSKKL VAGDTFVFLR GENGELRVGV RRANRQQSSM PSSVISSHSM HLGVLATACH 240
ATQTRSMFTV YYKPRTSQFI ISVNKYLEAM NSKFSVGMRF KMRFEGDDSP ERRFSGTVVG 300
VQDCSPHWKD SKWRSLIVNW DEPASFTRPD KVSPWEMEPF AASENVPQSV NKRARHVNEI 360
SALDVGVPSS NFWSSALTQS HEFAQSCITS QRNPPQNSDW PVSPYSTLNG QMVFPVEQKK 420
PETTTASCRL FGIDLMSSSL PAHEEKTAPM RPINITKPTL DSNADPKSEI SKLSEEKKQE 480
PAQASPKEVQ SKQINSSRSR TKVQMQGVPV GRAVDLTLIN GYVELIDDLE KLFDIEGELK 540
SRNQWEIVFT DDEGDMMLVG DDPWPEFCNM VKRIFIWSKE EVKKMTPGNQ LRILLTEVDT 600
TISKTENYSN
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ldv_A | 1e-164 | 2 | 340 | 14 | 355 | Auxin response factor 1 |
| 4ldw_A | 1e-164 | 2 | 340 | 14 | 355 | Auxin response factor 1 |
| 4ldw_B | 1e-164 | 2 | 340 | 14 | 355 | Auxin response factor 1 |
| 4ldx_A | 1e-164 | 2 | 340 | 14 | 355 | Auxin response factor 1 |
| 4ldx_B | 1e-164 | 2 | 340 | 14 | 355 | Auxin response factor 1 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JN979473 | 0.0 | JN979473.1 Brassica rapa subsp. pekinensis auxin response factor 9-1 (ARF9-1) mRNA, complete cds. |
