PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137523.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 176aa    MW: 20176.1 Da    PI: 8.8926
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.8e-142576255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    + +h e+E+ RR+++ s ++ Lr+llP  +   +++ s ++ L +Av+YI++Lq
  XP_009137523.1 25 KIMHREVEKHRRQEMASLYASLRSLLPLEF--IQGRRSTSDQLNEAVNYINHLQ 76
                    568*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.2622375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-132390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-82576No hitNo description
PfamPF000104.2E-112676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-112789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-62981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MADFPEKGRK RRKEVRVGNE ENMEKIMHRE VEKHRRQEMA SLYASLRSLL PLEFIQGRRS  60
TSDQLNEAVN YINHLQGNIK DMSSKRDDLM LLSGQSFESR NELRSDNSNH VVIRPCFVGV  120
EIVFSVLQTP LSSVLHVLSE HGLCVLNCIS SNVNGRLIHT LQAERADQIK AFVSKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1813RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137523.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137523.11e-127PREDICTED: transcription factor bHLH118 isoform X2
SwissprotQ9STJ74e-70BH118_ARATH; Transcription factor bHLH118
TrEMBLA0A078IIB11e-116A0A078IIB1_BRANA; BnaA03g47370D protein
TrEMBLA0A397L1941e-116A0A397L194_BRACM; Uncharacterized protein
TrEMBLM4DRM41e-116M4DRM4_BRARP; Uncharacterized protein
STRINGBra019167.1-P1e-117(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.11e-72bHLH family protein