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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009137422.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRF | ||||||||
Protein Properties | Length: 417aa MW: 45505.2 Da PI: 7.1659 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77 | 1.9e-24 | 170 | 214 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rC+RtDGKkWRCsr+v++++k+CErH h++r rsrk++e+ XP_009137422.1 170 DMEPWRCKRTDGKKWRCSRNVVPDQKYCERHAHKSRPRSRKHVET 214 79****************************************997 PP | |||||||
2 | QLQ | 50.6 | 5.9e-18 | 107 | 140 | 2 | 35 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 aF+ aQ+q+L++Q ++Ky++a++PvP+eLl + XP_009137422.1 107 AFSEAQWQELERQRNIFKYMMASLPVPSELLSPF 140 8******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.1E-10 | 106 | 142 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.2E-12 | 107 | 139 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.697 | 107 | 142 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.317 | 170 | 214 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-19 | 171 | 213 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MGTRAERNKE DFVGGFGFGV VEHSHKDVML PSHHYHSYSS PASASFCYCS NGVADPIFSA 60 SNTSTLGEMF SLGGSNSTAG VSVADPFFTL TSSGEMGRSM SGKEGAAFSE AQWQELERQR 120 NIFKYMMASL PVPSELLSPF SRNHTNNHDV ARGGSLKLGI ASNASNNTAD MEPWRCKRTD 180 GKKWRCSRNV VPDQKYCERH AHKSRPRSRK HVETPSHSHH NDARTTKNVA SQFATAYPQF 240 YGPPLSQFSA VSTLPPASSS YDHHHSGLRW LMKEGDSIAT LNPEIHEAAQ LKVGSSRELK 300 RGFEYDLNYI QNDPLVDQRF GALEGLLSPN RQETRRFLVE GEQDEAMGSS LTLSMAGGGG 360 MEEGEGRSQH QWISHEGPSW LCSTTPGGPL AEALCLGVSN NPSTSTTTTS SCSRSSS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot tips and flowers. {ECO:0000269|PubMed:12974814}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009137422.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018513243.1 | 0.0 | PREDICTED: growth-regulating factor 8-like isoform X3 | ||||
Swissprot | Q9SU44 | 0.0 | GRF8_ARATH; Growth-regulating factor 8 | ||||
TrEMBL | A0A3P6A0Q3 | 0.0 | A0A3P6A0Q3_BRACM; Uncharacterized protein | ||||
STRING | Bra019244.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24150.1 | 0.0 | growth-regulating factor 8 |
Publications ? help Back to Top | |||
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