PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136875.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 200aa    MW: 21989.2 Da    PI: 7.1972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136875.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000174062123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C + F++   L  H+++H
  XP_009136875.1 40 YACNFCRREFRSAQALGGHMNVH 62
                    89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.72E-63767No hitNo description
PfamPF139122.4E-54063IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1574067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MWNPSKVERL EDDDESWEVK AFEQDTKGNI SGTTWPPRSY ACNFCRREFR SAQALGGHMN  60
VHRRDRASKA HQGPAAAVAA RSGGRSRGGK KTFLSSCVLP TATLIIQSTA SNNEGLSHFY  120
QLQNPNSMFG HSSDTVNFHG SSSFPSSNLD FSVLNSPVEV PPRFIEYSTG DDESIGSMKE  180
TKRTSVGEPD LELRLGHNPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-123562229superman protein
2l1o_A1e-123562229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.255300.0flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834920.0AC183492.1 Brassica oleracea Contig G, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136875.21e-149PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103860946
TrEMBLA0A078JNL81e-148A0A078JNL8_BRANA; BnaUnng02710D protein
TrEMBLM4D8281e-148M4D828_BRARP; Uncharacterized protein
STRINGBra012638.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-98C2H2 family protein