PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TALE

Protein Properties

Length: 450aa MW: 50309.4 Da PI: 6.2614

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009136306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.4	1.2e-08	297	334	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ qV++WF N R + XP_009136306.1 297 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 334 554459******************************88 PP
2	BELL	129.2	1.5e-41	159	230	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai++qi XP_009136306.1 159 ERQELQNKLSKLLSILDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQI 230 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.8E-68	99	228	IPR006563	POX domain
Pfam	PF07526	1.3E-47	106	227	IPR006563	POX domain
Gene3D	G3DSA:1.20.5.350	4.3E-4	115	179	No hit	No description
PROSITE profile	PS50071	11.531	275	338	IPR001356	Homeobox domain
CDD	cd00086	2.55E-11	278	339	No hit	No description
SMART	SM00389	7.0E-9	278	342	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.98E-17	279	345	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-27	281	344	IPR009057	Homeodomain-like
Pfam	PF05920	8.2E-18	295	334	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MATYYKSSGS SGIYSEFVPG NAMIYTNPAV SYFPGEANNV SASKEIQVLS SYGEEASHVV 60 EIQDSRSWRD QEDRACFPVM MRPTTGQGLS LGISSQIETQ VVSGFHNSKY LEAAQELLDE 120 AVNVKKALKQ FQPEGDKTEE DKEKNLQESI TNPDLPQAER QELQNKLSKL LSILDEVDRR 180 YKQYYHQMQI VVSSFDVIAG CGAAKPYTAL ALQTISRHFR CLRDAISGQI LVIRRSLGGE 240 HDGLDGRGVG ISRLRNVDQK VRQQRALQRL GVVQPHAWRP QRGLPDSSVL ILRAWLFEHF 300 LHPYPKDSDK IMLARQTGLS RGQVSNWFIN ARVRLWKPMV EEMYKEEFTD ALEENVTNLS 360 SGNNRLAETT ESQEQQLVSS SNNGGASTST VARGGEDRLM MITEMTRNGS GGMSLTLGIP 420 DNYENSFQYL NSGNGQHRLG SSQLLQDFVA

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MATYYKSSGS SGIYSEFVPG NAMIYTNPAV SYFPGEANNV SASKEIQVLS SYGEEASHVV  60
EIQDSRSWRD QEDRACFPVM MRPTTGQGLS LGISSQIETQ VVSGFHNSKY LEAAQELLDE  120
AVNVKKALKQ FQPEGDKTEE DKEKNLQESI TNPDLPQAER QELQNKLSKL LSILDEVDRR  180
YKQYYHQMQI VVSSFDVIAG CGAAKPYTAL ALQTISRHFR CLRDAISGQI LVIRRSLGGE  240
HDGLDGRGVG ISRLRNVDQK VRQQRALQRL GVVQPHAWRP QRGLPDSSVL ILRAWLFEHF  300
LHPYPKDSDK IMLARQTGLS RGQVSNWFIN ARVRLWKPMV EEMYKEEFTD ALEENVTNLS  360
SGNNRLAETT ESQEQQLVSS SNNGGASTST VARGGEDRLM MITEMTRNGS GGMSLTLGIP  420
DNYENSFQYL NSGNGQHRLG SSQLLQDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	5e-15	284	342	5	63	Homeobox protein Meis2
3k2a_B	5e-15	284	342	5	63	Homeobox protein Meis2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009136306.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232504	0.0	AC232504.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057N22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009136305.1	0.0	PREDICTED: BEL1-like homeodomain protein 7
Refseq	XP_009136306.1	0.0	PREDICTED: BEL1-like homeodomain protein 7
Swissprot	Q9SIW1	0.0	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	M4D9B6	0.0	M4D9B6_BRARP; Uncharacterized protein
STRING	Bra013076.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	0.0	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]