PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136241.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 282aa    MW: 31483.1 Da    PI: 8.8609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.87.9e-13109156355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r h ++Er+RR+++ ++f  L +++P +     kK +Ka++L  +++Y+k+Lq
  XP_009136241.1 109 RDHIMAERKRREKLSQRFIALSTIVPGL-----KKTDKASVLGGTIKYLKHLQ 156
                     5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.612106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10109156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-16110168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-16110172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.49E-12111160No hitNo description
SMARTSM003532.1E-13112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDISCNSEYN QLEYQMMTNF PTPEELNDIL SLPSLQTMEA QLYSNQSPVV TTLNAEAAKQ  60
LKHRSYMNTT TNQCSSGFGE YGAMGNLQPK KEPTLLAQRN VSRGVSQARD HIMAERKRRE  120
KLSQRFIALS TIVPGLKKTD KASVLGGTIK YLKHLQDRVR FLEEQASQRT IESVVYLNKS  180
RLSVADTELE CMALPEIEAR SSGKNVLIRV HCERRKGVVE ITMAEIEKLK LTVINSSVVT  240
FGSSSLHLTI ISQMGEGFNI TTKDVATSIK SSLEAFMNAN LV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119ERKRRE
2115120RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136241.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136241.10.0PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0722e-51BH025_ARATH; Transcription factor bHLH25
TrEMBLM4D9G80.0M4D9G8_BRARP; Uncharacterized protein
STRINGBra013128.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-54bHLH family protein