PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135899.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 339aa    MW: 39220 Da    PI: 4.4874
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.62.8e-1293174586
        trihelix   5 qevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     qe  + +e+  ++  +l+r++l+  +W ev++k+ +e   ers +qC+   +nl+++ykk++    k     ss++++f++++
  XP_009135899.1  93 QEAFVVLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRSERSETQCRRMVDNLKRKYKKERVKVDKL-GLGSSKWSFFNKMD 174
                     667777888888888999****************777889*********************9998886.78899********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.3E-1792176No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGDSEDETGY PKKFYPLNRQ THPMYTRPIP KRHAYYHEEE DEEEDQEDDV GVGGVGGGGG  60
YSHRERFQKR LKPTKPVPGY DFGSGPSETK AEQEAFVVLE VWGDRFLQLG RRSLRNEDWN  120
EVAEKVSEEL RSERSETQCR RMVDNLKRKY KKERVKVDKL GLGSSKWSFF NKMDMLLGGG  180
GSSAKPEFGL ACGVDSGEFV FMNTKVYLEK SNGFDEMMDS PGDSEEDDDE EEEVEYERRR  240
KKGDDAASYK LLAESVERFG KVYEKMERSK KEQMKELEKM RGEFQRDLEL QKKQIVERAQ  300
SEIARLREEE EENETHHDDD GGESEDEGME NDSDVNLSD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.250350.0silique
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135899.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513592.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLM4CCM10.0M4CCM1_BRARP; Uncharacterized protein
STRINGBra001951.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97792733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-139Trihelix family protein