PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009135745.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 324aa    MW: 36223.2 Da    PI: 6.44
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009135745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07235275954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+RR+r+ +++  L+ l+P       +K++ a++L +A +Y+k L
  XP_009135745.1 235 ARQRRERVSEKIRVLQNLVPGG-----TKMDTASMLDEAANYLKFL 275
                     69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.71226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-13231290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.45E-10232280No hitNo description
SMARTSM003533.0E-12232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-11234284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-5235275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEGLEAIYGM TRESKIMEHQ GSDLIWGGNE LSSCFISDLG IIGETQHHQH VGNRDSSIDP  60
SSIDCLLSAT TNSNNTSIQN DEGISELFSD CQTLWSFGGV SSAESENREI TTTKAKSFKR  120
NRGNRDETGS HFCLAGHPQE ESEKGNFKLI YDENQSKSKK PRTEKDRDGS SNISFRQHST  180
SLSDNVEPDA EAIAQMKEMI YTAAAFRPVN LGLETVEKPK RKNVKISTDP QTVAARQRRE  240
RVSEKIRVLQ NLVPGGTKMD TASMLDEAAN YLKFLRAQVK ALENLRPKLD PTNFSFSSPS  300
SFPLFHPSFI PFQNPNQVHH HQEC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235240RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009135745.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135745.10.0PREDICTED: transcription factor bHLH87-like
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLM4CC960.0M4CC96_BRARP; Uncharacterized protein
STRINGBra001826.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-176bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]